Sequence Similarity Clusters for the Entities in PDB 1NKQ

Entity #1 | Chains: A,B,C,D,E,F
Hypothetical 28.8 kDa protein in PSD1-SKO1 intergenic region protein, length: 259 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 12735
95 % 1 1 12294 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.5
PDBFlex
90 % 1 1 12124
70 % 1 1 11455
50 % 1 1 10257
40 % 1 1 9314
30 % 2 2 6443

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures