Sequence Similarity Clusters for the Entities in PDB 1NKP

Entity #1 | Chains: F,G,H,J
5'-D(*CP*GP*AP*GP*TP*AP*GP*CP*AP*CP*GP*TP*GP*CP*TP*AP*CP*TP*C)-3' dna, length: 19 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: A,D
Myc proto-oncogene protein protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 47379
95 % 1 1 35381 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.9
PDBFlex
90 % 1 1 33810
70 % 1 1 30088
50 % 1 1 25714
40 % 1 6 5492
30 % 1 6 4939
Entity #3 | Chains: B,E
Max protein protein, length: 83 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 4 10752
95 % 1 5 7984 Flexibility: Low
Max RMSD: 2.2, Avg RMSD: 1.1
PDBFlex
90 % 1 5 7941
70 % 1 5 7695
50 % 1 5 7078
40 % 2 6 5492
30 % 2 6 4939

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.