Sequence Similarity Clusters for the Entities in PDB 1NKP

Entity #1 | Chains: F,G,H,J
5'-D(*CP*GP*AP*GP*TP*AP*GP*CP*AP*CP*GP*TP*GP*CP*TP*AP*CP*TP*C)-3' dna, length: 19 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: A,D
Myc proto-oncogene protein protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 45656
95 % 1 1 38020
90 % 1 1 36275
70 % 1 1 30142
50 % 1 1 25702
40 % 1 6 5596
30 % 1 6 4930
Entity #3 | Chains: B,E
Max protein protein, length: 83 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 4 11387
95 % 1 5 8188 Flexibility: Low
Max RMSD: 2.2, Avg RMSD: 1.1
PDBFlex
90 % 1 5 8117
70 % 1 5 7820
50 % 1 5 7188
40 % 2 6 5596
30 % 2 6 4930

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures