Sequence Similarity Clusters for the Entities in PDB 1NKP

Entity #1 | Chains: F,G,H,J
5'-D(*CP*GP*AP*GP*TP*AP*GP*CP*AP*CP*GP*TP*GP*CP*TP*AP*CP*TP*C)-3' dna, length: 19 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: A,D
Myc proto-oncogene protein protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 47973
95 % 1 1 35829
90 % 1 1 34213
70 % 1 1 30409
50 % 1 1 25982
40 % 1 6 5567
30 % 1 6 5003
Entity #3 | Chains: B,E
Max protein protein, length: 83 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 4 10899
95 % 1 5 8091 Flexibility: Low
Max RMSD: 2.2, Avg RMSD: 1.1
PDBFlex
90 % 1 5 8040
70 % 1 5 7779
50 % 1 5 7164
40 % 2 6 5567
30 % 2 6 5003

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures