Sequence Similarity Clusters for the Entities in PDB 1NKK

Entity #1 | Chains: A,B,C,D
Capsid protein P40 protein, length: 256 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 20221
95 % 11 15 1505 Flexibility: Low
Max RMSD: 3.1, Avg RMSD: 0.9
PDBFlex
90 % 11 15 1537
70 % 11 15 1539
50 % 11 15 1589
40 % 11 15 1607
30 % 14 18 1339
Entity #2 | Chains: E,F,G,H
Peptidomimetic inhibitor protein, length: 6 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.