Sequence Similarity Clusters for the Entities in PDB 1NKK

Entity #1 | Chains: A,B,C,D
Capsid protein P40 protein, length: 256 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 20564
95 % 11 15 1527
90 % 11 15 1562
70 % 11 15 1564
50 % 11 15 1614
40 % 11 15 1633
30 % 14 18 1358
Entity #2 | Chains: E,F,G,H
Peptidomimetic inhibitor protein, length: 6 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures