Sequence Similarity Clusters for the Entities in PDB 1NKD

Entity #1 | Chains: A
ROP protein, length: 65 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 46013
95 % 1 14 2480 Flexibility: Low
Max RMSD: 6.5, Avg RMSD: 1.9
PDBFlex
90 % 1 15 2324
70 % 1 17 1672
50 % 1 17 1717
40 % 1 17 1704
30 % 1 17 1691

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1NKD 1 A ROP 562
2 4DO2 1 A, B Regulatory protein rop 562
3 1RPO 1 A ROP PROTEIN 562
4 2IJK 1 A, B Regulatory protein rop 562
5 1ROP 1 A ROP PROTEIN 562
6 1B6Q 1 A ROP 562
7 2IJH 1 A, B, C Regulatory protein rop 562
8 3K79 1 A Regulatory protein rop 562
9 1GMG 1 A, B REGULATORY PROTEIN ROP 562
10 1GTO 1 A, B, C ROP 562
11 2IJJ 1 A, B, C Regulatory protein rop 562
12 2GHY 1 A, B Regulatory protein rop 562
13 2IJI 1 A Regulatory protein rop 562
14 1RPR 1 A, B ROP 562