Sequence Similarity Clusters for the Entities in PDB 1NKD

Entity #1 | Chains: A
ROP protein, length: 65 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 49245
95 % 1 14 2695 Flexibility: Low
Max RMSD: 6.5, Avg RMSD: 1.9
PDBFlex
90 % 1 15 2521
70 % 1 17 1834
50 % 1 17 1858
40 % 1 17 1846
30 % 1 17 1806

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures