Sequence Similarity Clusters for the Entities in PDB 1NKD

Entity #1 | Chains: A
ROP protein, length: 65 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 46642
95 % 1 14 2526 Flexibility: Low
Max RMSD: 6.5, Avg RMSD: 1.9
PDBFlex
90 % 1 15 2363
70 % 1 17 1718
50 % 1 17 1752
40 % 1 17 1736
30 % 1 17 1712

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures