Sequence Similarity Clusters for the Entities in PDB 1NK8

Entity #1 | Chains: B
DNA PRIMER STRAND dna, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: C
DNA TEMPLATE STRAND dna, length: 15 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A
DNA POLYMERASE I protein, length: 580 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 22 46 805
95 % 51 95 305 Flexibility: Low
Max RMSD: 2.3, Avg RMSD: 1.1
PDBFlex
90 % 51 95 316
70 % 51 95 363
50 % 51 95 421
40 % 51 95 446
30 % 51 95 446

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.