Sequence Similarity Clusters for the Entities in PDB 1NK6

Entity #1 | Chains: B
DNA PRIMER STRAND dna, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: C
DNA TEMPLATE STRAND dna, length: 15 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A
DNA POLYMERASE I protein, length: 580 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 45 47 864
95 % 91 100 326 Flexibility: Low
Max RMSD: 2.5, Avg RMSD: 1.1
PDBFlex
90 % 91 100 336
70 % 91 100 382
50 % 91 100 454
40 % 91 100 493
30 % 91 100 495

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 3TAN 1 A DNA polymerase I Bacillus Fragment (UNP residues 285-876) 129337 2.7.7.7 | Details
2 3PV8 1 A, D DNA polymerase I Bacillus Fragment (analogous to E. coli Klenow Fragment) 1462 2.7.7.7 | Details
3 4E0D 1 A DNA polymerase Bacillus Fragment (analogous to E. coli Klenow Fragment) 1462 2.7.7.7 | Details
4 4YFU 1 A, D DNA polymerase 1422 2.7.7.7 | Details
5 4DQQ 1 A, D DNA polymerase un residues 287-878 1462 2.7.7.7 | Details
6 6DSW 3 A DNA polymerase I 1422 2.7.7.7 | Details
7 4F3O 1 A, D DNA polymerase unp residues 287-878 1462 2.7.7.7 | Details
8 4F4K 1 A, D DNA polymerase unp residues 287-878 1462 2.7.7.7 | Details
9 3TAR 1 A DNA polymerase I Bacillus Fragment (UNP residues 285-876) 129337 2.7.7.7 | Details
10 3PX6 1 A, D DNA polymerase I Bacillus Fragment (analogous to E. coli Klenow Fragment) 1462 2.7.7.7 | Details
11 4F2R 1 A, D DNA polymerase unp residues 287-878 1462 2.7.7.7 | Details
12 4DQS 1 A DNA polymerase un residues 287-878 1462 2.7.7.7 | Details
13 4EZ9 1 A, D DNA polymerase Bacillus Fragment (analogous to E. coli Klenow Fragment, unp residues 287-878) 1462 2.7.7.7 | Details
14 3TAQ 1 A DNA polymerase I Bacillus Fragment (UNP residues 285-876) 129337 2.7.7.7 | Details
15 4EZ6 1 A, D DNA polymerase Bacillus Fragment (analogous to E. coli Klenow Fragment, unp residues 287-878) 1462 2.7.7.7 | Details
16 4DQI 1 A, D DNA polymerase I Bacillus Fragment (analogous to E. coli Klenow Fragment) 1462 2.7.7.7 | Details
17 4F2S 1 A, D DNA polymerase unp residues 287-878 1462 2.7.7.7 | Details
18 3TI0 1 A, D DNA polymerase I Bacillus Fragment (UNP residues 285-876) 129337 2.7.7.7 | Details
19 2HHV 3 A DNA Polymerase I residues 299-876 (analogous to E Coli Klenow fragment) 1422 2.7.7.7 | Details
20 4F8R 1 A, D DNA polymerase unp residues 287-898 1462 2.7.7.7 | Details
21 3TAP 1 A DNA polymerase I Bacillus Fragment (UNP residues 285-876) 129337 2.7.7.7 | Details
22 3THV 1 A, D DNA polymerase I Bacillus Fragment (UNP residues 285-876) 129337 2.7.7.7 | Details
23 4DSF 1 A, D DNA polymerase un residues 287-878 1462 2.7.7.7 | Details
24 4DSE 1 A, D DNA polymerase unp residues 287-878 1462 2.7.7.7 | Details
25 3PX4 1 A, D DNA polymerase I Bacillus Fragment (analogous to E. coli Klenow Fragment) 1462 2.7.7.7 | Details
26 4DS4 1 A, D DNA polymerase unp residues 287-878 1462 2.7.7.7 | Details
27 4DS5 1 A, D DNA polymerase unp residues 287-878 1462 2.7.7.7 | Details
28 1U4B 3 A DNA polymerase I see remark 400 analogous to the E. coli klenow fragment 1422 2.7.7.7 | Details
29 4DQP 1 A, D DNA polymerase unp residues 287-878 1462 2.7.7.7 | Details
30 4B9S 1 A DNA POLYMERASE 1422 2.7.7.7 | Details
31 1NK4 3 A DNA POLYMERASE I BACILLUS FRAGMENT (ANALOGOUS TO THE E. COLI KLENOW FRAGMENT) 1422 2.7.7.7 | Details
32 1L3S 3 A DNA Polymerase I Bacillus Fragment (analogous to the E. coli Klenow Fragment) 1422 2.7.7.7 | Details
33 1NK0 3 A DNA POLYMERASE I BACILLUS FRAGMENT (ANALOGOUS TO THE E. COLI KLENOW FRAGMENT) 1422 2.7.7.7 | Details
34 3PX0 1 A, D DNA polymerase I Bacillus Fragment (analogous to E. coli Klenow Fragment) 1462 2.7.7.7 | Details
35 1L3T 3 A DNA Polymerase I Bacillus Fragment (analogous to the E. coli Klenow Fragment) 1422 2.7.7.7 | Details
36 1NJX 3 A DNA POLYMERASE I BACILLUS FRAGMENT (ANALOGOUS TO THE E. COLI KLENOW FRAGMENT) 1422 2.7.7.7 | Details
37 1L3V 3 A DNA Polymerase I Bacillus Fragment (analogous to the E. coli Klenow Fragment) 1422 2.7.7.7 | Details
38 3HT3 1 A, D DNA polymerase I, large fragment Residues 298-876 1422 2.7.7.7 | Details
39 3HPO 1 A DNA polymerase I, large fragment Residues 297-876 1422 2.7.7.7 | Details
40 1L3U 3 A DNA Polymerase I Bacillus Fragment (analogous to the E. coli Klenow Fragment) 1422 2.7.7.7 | Details
41 1NKC 3 A DNA POLYMERASE I BACILLUS FRAGMENT (ANALOGOUS TO THE E. COLI KLENOW FRAGMENT) 1422 2.7.7.7 | Details
42 2HHU 3 A DNA Polymerase I residues 299-876 (analogous to E Coli Klenow Fragment) 1422 2.7.7.7 | Details
43 4DQR 1 A, D DNA polymerase unp residues 287-878 1462 2.7.7.7 | Details
44 2HHQ 3 A DNA polymerase I residues 299-876 (analogous to E Coli Klenow Fragment) 1422 2.7.7.7 | Details
45 3HP6 1 A, D DNA polymerase I, large fragment Residues 297-876 1422 2.7.7.7 | Details
46 2HHS 3 A DNA polymerase I residues 299-876 (analogous to E Coli Klenow Fragment) 1422 2.7.7.7 | Details
47 2HHW 3 A, D DNA Polymerase I residues 299-876 (analogous to E coli Klenow fragment) 1422 2.7.7.7 | Details
48 1XWL 1 A DNA POLYMERASE I RESIDUES 297-876 1422 2.7.7.7 | Details
49 4DWI 1 A DNA polymerase 1422 2.7.7.7 | Details
50 1NKE 3 A DNA POLYMERASE I BACILLUS FRAGMENT (ANALOGOUS TO THE E. COLI KLENOW FRAGMENT) 1422 2.7.7.7 | Details
51 4UQG 1 A DNA POLYMERASE POLYMERASE DOMAIN, RESIDUES 2-580 1422 2.7.7.7 | Details
52 1NK8 3 A DNA POLYMERASE I BACILLUS FRAGMENT (ANALOGOUS TO THE E. COLI KLENOW FRAGMENT) 1422 2.7.7.7 | Details
53 6DSX 3 A DNA polymerase I 1422 2.7.7.7 | Details
54 1L5U 3 A DNA Polymerase I Bacillus Fragment (analogous to the E. coli Klenow Fragment) 1422 2.7.7.7 | Details
55 2BDP 3 A PROTEIN (DNA POLYMERASE I) RESIDUES 297-876 1422 2.7.7.7 | Details
56 3EZ5 1 A, D DNA polymerase I 1422 2.7.7.7 | Details
57 4B9V 1 A DNA POLYMERASE 1422 2.7.7.7 | Details
58 6DSV 2 A DNA polymerase I 1422 2.7.7.7 | Details
59 4BDP 3 A PROTEIN (DNA POLYMERASE I) RESIDUES 297-876 1422 2.7.7.7 | Details
60 2HVI 3 A, D DNA Polymerase I residues 299-876 (analogous to E Coli Klenow Fragment) 1422 2.7.7.7 | Details
61 1NK7 3 A DNA POLYMERASE I BACILLUS FRAGMENT (ANALOGOUS TO THE E. COLI KLENOW FRAGMENT) 1422 2.7.7.7 | Details
62 1XC9 3 A DNA polymerase I see remark 400 analogous to the E. coli klenow fragment 1422 2.7.7.7 | Details
63 1NK9 3 A DNA POLYMERASE I BACILLUS FRAGMENT (ANALOGOUS TO THE E. COLI KLENOW FRAGMENT) 1422 2.7.7.7 | Details
64 1U45 3 A DNA polymerase I see remark 400 analogous to the E. coli klenow fragment 1422 2.7.7.7 | Details
65 6DSY 3 A DNA polymerase I 1422 2.7.7.7 | Details
66 4B9M 1 A DNA POLYMERASE I 1422 2.7.7.7 | Details
67 1NJW 3 A DNA POLYMERASE I BACILLUS FRAGMENT (ANALOGOUS TO THE E. COLI KLENOW FRAGMENT) 1422 2.7.7.7 | Details
68 4B9L 1 A DNA POLYMERASE I 1422 2.7.7.7 | Details
69 2HW3 3 A DNA Polymerase I residues 299-876 (analogous to E Coli Klenow Fragment) 1422 2.7.7.7 | Details
70 1LV5 3 A, B DNA POLYMERASE I BACILLUS FRAGMENT (ANALOGOUS TO THE E. COLI KLENOW FRAGMENT) 1422 2.7.7.7 | Details
71 4DSI 1 A DNA polymerase RESIDUES 298-876 1422 2.7.7.7 | Details
72 2HHT 3 A DNA polymerase I residues 299-876 (analogous to E Coli Klenow Fragment) 1422 2.7.7.7 | Details
73 1U47 3 A DNA polymerase I see remark 400 analogous to the E. coli klenow fragment 1422 2.7.7.7 | Details
74 1UA1 3 A DNA polymerase I see remark 400 analogous to the E. coli klenow fragment 1422 2.7.7.7 | Details
75 4B9U 1 A DNA POLYMERASE 1422 2.7.7.7 | Details
76 6DSU 3 A DNA polymerase I 1422 2.7.7.7 | Details
77 3BDP 3 A PROTEIN (DNA POLYMERASE I) RESIDUES 297-876 1422 2.7.7.7 | Details
78 1NKB 3 A DNA POLYMERASE I BACILLUS FRAGMENT (ANALOGOUS TO THE E. COLI KLENOW FRAGMENT) 1422 2.7.7.7 | Details
79 4O0I 1 A DNA polymerase I 1422 2.7.7.7 | Details
80 1U48 3 A DNA polymerase I see remark 400 analogous to the E. coli klenow fragment 1422 2.7.7.7 | Details
81 4B9N 1 A DNA POLYMERASE 1422 2.7.7.7 | Details
82 1NJY 3 A DNA POLYMERASE I BACILLUS FRAGMENT (ANALOGOUS TO THE E. COLI KLENOW FRAGMENT) 1422 2.7.7.7 | Details
83 4DSK 3 A DNA polymerase RESIDUES 298-876 1422 2.7.7.7 | Details
84 3EYZ 1 A DNA polymerase I 1422 2.7.7.7 | Details
85 1UA0 3 A DNA polymerase I see remark 400 analogous to the E. coli klenow fragment 1422 2.7.7.7 | Details
86 2Y1J 1 A DNA POLYMERASE I RESIDUES 297-876 1422 2.7.7.7 | Details
87 1NK5 3 A DNA POLYMERASE I BACILLUS FRAGMENT (ANALOGOUS TO THE E. COLI KLENOW FRAGMENT) 1422 2.7.7.7 | Details
88 1NJZ 3 A DNA POLYMERASE I BACILLUS FRAGMENT (ANALOGOUS TO THE E. COLI KLENOW FRAGMENT) 1422 2.7.7.7 | Details
89 1U49 3 A DNA polymerase I see remark 400 analogous to the E. coli klenow fragment 1422 2.7.7.7 | Details
90 2XY5 1 A DNA POLYMERASE I 1422 2.7.7.7 | Details
91 1NK6 3 A DNA POLYMERASE I BACILLUS FRAGMENT (ANALOGOUS TO THE E. COLI KLENOW FRAGMENT) 1422 2.7.7.7 | Details
92 2HHX 3 A DNA Polymerase I residues 299-876 (Analogous to E Coli Klenow Fragment) 1422 2.7.7.7 | Details
93 2XY6 1 A DNA POLYMERASE I 1422 2.7.7.7 | Details
94 2HVH 3 A, D DNA Polymerase I residues 299-876 (analogous to E. coli Klenow fragment) 1422 2.7.7.7 | Details
95 4DSL 1 A DNA polymerase RESIDUES 298-876 1422 2.7.7.7 | Details
96 4B9T 1 A DNA POLYMERASE 1422 2.7.7.7 | Details
97 2XO7 1 A DNA POLYMERASE I RESIDUES 297-876 1422 2.7.7.7 | Details
98 4DSJ 1 A, B DNA polymerase RESIDUES 298-876 1422 2.7.7.7 | Details
99 2Y1I 1 A DNA POLYMERASE I RESIDUES 297-876 1422 2.7.7.7 | Details
100 2XY7 1 A DNA POLYMERASE I 1422 2.7.7.7 | Details