Sequence Similarity Clusters for the Entities in PDB 1NK6

Entity #1 | Chains: B
DNA PRIMER STRAND dna, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: C
DNA TEMPLATE STRAND dna, length: 15 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A
DNA POLYMERASE I protein, length: 580 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 45 47 828
95 % 86 95 334 Flexibility: Low
Max RMSD: 2.5, Avg RMSD: 1.1
PDBFlex
90 % 86 95 349
70 % 86 95 392
50 % 86 95 461
40 % 86 38 497
30 % 86 95 499

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 3TAN 1 A DNA polymerase I Bacillus Fragment (UNP residues 285-876) 129337 2.7.7.7 | Details
2 3PV8 1 A, D DNA polymerase I Bacillus Fragment (analogous to E. coli Klenow Fragment) 1462 2.7.7.7 | Details
3 4E0D 1 A DNA polymerase Bacillus Fragment (analogous to E. coli Klenow Fragment) 1462 2.7.7.7 | Details
4 4YFU 1 A, D DNA polymerase 1422 2.7.7.7 | Details
5 4DQQ 1 A, D DNA polymerase un residues 287-878 1462 2.7.7.7 | Details
6 4F3O 1 A, D DNA polymerase unp residues 287-878 1462 2.7.7.7 | Details
7 4F4K 1 A, D DNA polymerase unp residues 287-878 1462 2.7.7.7 | Details
8 3TAR 1 A DNA polymerase I Bacillus Fragment (UNP residues 285-876) 129337 2.7.7.7 | Details
9 3PX6 1 A, D DNA polymerase I Bacillus Fragment (analogous to E. coli Klenow Fragment) 1462 2.7.7.7 | Details
10 4F2R 1 A, D DNA polymerase unp residues 287-878 1462 2.7.7.7 | Details
11 4DQS 1 A DNA polymerase un residues 287-878 1462 2.7.7.7 | Details
12 4EZ9 1 A, D DNA polymerase Bacillus Fragment (analogous to E. coli Klenow Fragment, unp residues 287-878) 1462 2.7.7.7 | Details
13 3TAQ 1 A DNA polymerase I Bacillus Fragment (UNP residues 285-876) 129337 2.7.7.7 | Details
14 4EZ6 1 A, D DNA polymerase Bacillus Fragment (analogous to E. coli Klenow Fragment, unp residues 287-878) 1462 2.7.7.7 | Details
15 4DQI 1 A, D DNA polymerase I Bacillus Fragment (analogous to E. coli Klenow Fragment) 1462 2.7.7.7 | Details
16 4F2S 1 A, D DNA polymerase unp residues 287-878 1462 2.7.7.7 | Details
17 3TI0 1 A, D DNA polymerase I Bacillus Fragment (UNP residues 285-876) 129337 2.7.7.7 | Details
18 2HHV 3 A DNA Polymerase I residues 299-876 (analogous to E Coli Klenow fragment) 1422 2.7.7.7 | Details
19 4F8R 1 A, D DNA polymerase unp residues 287-898 1462 2.7.7.7 | Details
20 3TAP 1 A DNA polymerase I Bacillus Fragment (UNP residues 285-876) 129337 2.7.7.7 | Details
21 3THV 1 A, D DNA polymerase I Bacillus Fragment (UNP residues 285-876) 129337 2.7.7.7 | Details
22 4DSF 1 A, D DNA polymerase un residues 287-878 1462 2.7.7.7 | Details
23 4DSE 1 A, D DNA polymerase unp residues 287-878 1462 2.7.7.7 | Details
24 3PX4 1 A, D DNA polymerase I Bacillus Fragment (analogous to E. coli Klenow Fragment) 1462 2.7.7.7 | Details
25 4DS4 1 A, D DNA polymerase unp residues 287-878 1462 2.7.7.7 | Details
26 4DS5 1 A, D DNA polymerase unp residues 287-878 1462 2.7.7.7 | Details
27 1U4B 3 A DNA polymerase I see remark 400 analogous to the E. coli klenow fragment 1422 2.7.7.7 | Details
28 4DQP 1 A, D DNA polymerase unp residues 287-878 1462 2.7.7.7 | Details
29 4B9S 1 A DNA POLYMERASE 1422 2.7.7.7 | Details
30 1NK4 3 A DNA POLYMERASE I BACILLUS FRAGMENT (ANALOGOUS TO THE E. COLI KLENOW FRAGMENT) 1422 2.7.7.7 | Details
31 1L3S 3 A DNA Polymerase I Bacillus Fragment (analogous to the E. coli Klenow Fragment) 1422 2.7.7.7 | Details
32 1NK0 3 A DNA POLYMERASE I BACILLUS FRAGMENT (ANALOGOUS TO THE E. COLI KLENOW FRAGMENT) 1422 2.7.7.7 | Details
33 3PX0 1 A, D DNA polymerase I Bacillus Fragment (analogous to E. coli Klenow Fragment) 1462 2.7.7.7 | Details
34 1L3T 3 A DNA Polymerase I Bacillus Fragment (analogous to the E. coli Klenow Fragment) 1422 2.7.7.7 | Details
35 1NJX 3 A DNA POLYMERASE I BACILLUS FRAGMENT (ANALOGOUS TO THE E. COLI KLENOW FRAGMENT) 1422 2.7.7.7 | Details
36 1L3V 3 A DNA Polymerase I Bacillus Fragment (analogous to the E. coli Klenow Fragment) 1422 2.7.7.7 | Details
37 3HT3 1 A, D DNA polymerase I, large fragment Residues 298-876 1422 2.7.7.7 | Details
38 3HPO 1 A DNA polymerase I, large fragment Residues 297-876 1422 2.7.7.7 | Details
39 1L3U 3 A DNA Polymerase I Bacillus Fragment (analogous to the E. coli Klenow Fragment) 1422 2.7.7.7 | Details
40 1NKC 3 A DNA POLYMERASE I BACILLUS FRAGMENT (ANALOGOUS TO THE E. COLI KLENOW FRAGMENT) 1422 2.7.7.7 | Details
41 2HHU 3 A DNA Polymerase I residues 299-876 (analogous to E Coli Klenow Fragment) 1422 2.7.7.7 | Details
42 4DQR 1 A, D DNA polymerase unp residues 287-878 1462 2.7.7.7 | Details
43 2HHQ 3 A DNA polymerase I residues 299-876 (analogous to E Coli Klenow Fragment) 1422 2.7.7.7 | Details
44 3HP6 1 A, D DNA polymerase I, large fragment Residues 297-876 1422 2.7.7.7 | Details
45 2HHS 3 A DNA polymerase I residues 299-876 (analogous to E Coli Klenow Fragment) 1422 2.7.7.7 | Details
46 2HHW 3 A, D DNA Polymerase I residues 299-876 (analogous to E coli Klenow fragment) 1422 2.7.7.7 | Details
47 1XWL 1 A DNA POLYMERASE I RESIDUES 297-876 1422 2.7.7.7 | Details
48 4DWI 1 A DNA polymerase 1422 2.7.7.7 | Details
49 1NKE 3 A DNA POLYMERASE I BACILLUS FRAGMENT (ANALOGOUS TO THE E. COLI KLENOW FRAGMENT) 1422 2.7.7.7 | Details
50 4UQG 1 A DNA POLYMERASE POLYMERASE DOMAIN, RESIDUES 2-580 1422 2.7.7.7 | Details
51 1NK8 3 A DNA POLYMERASE I BACILLUS FRAGMENT (ANALOGOUS TO THE E. COLI KLENOW FRAGMENT) 1422 2.7.7.7 | Details
52 1L5U 3 A DNA Polymerase I Bacillus Fragment (analogous to the E. coli Klenow Fragment) 1422 2.7.7.7 | Details
53 2BDP 3 A PROTEIN (DNA POLYMERASE I) RESIDUES 297-876 1422 2.7.7.7 | Details
54 3EZ5 1 A, D DNA polymerase I 1422 2.7.7.7 | Details
55 4B9V 1 A DNA POLYMERASE 1422 2.7.7.7 | Details
56 4BDP 3 A PROTEIN (DNA POLYMERASE I) RESIDUES 297-876 1422 2.7.7.7 | Details
57 2HVI 3 A, D DNA Polymerase I residues 299-876 (analogous to E Coli Klenow Fragment) 1422 2.7.7.7 | Details
58 1NK7 3 A DNA POLYMERASE I BACILLUS FRAGMENT (ANALOGOUS TO THE E. COLI KLENOW FRAGMENT) 1422 2.7.7.7 | Details
59 1XC9 3 A DNA polymerase I see remark 400 analogous to the E. coli klenow fragment 1422 2.7.7.7 | Details
60 1NK9 3 A DNA POLYMERASE I BACILLUS FRAGMENT (ANALOGOUS TO THE E. COLI KLENOW FRAGMENT) 1422 2.7.7.7 | Details
61 1U45 3 A DNA polymerase I see remark 400 analogous to the E. coli klenow fragment 1422 2.7.7.7 | Details
62 4B9M 1 A DNA POLYMERASE I 1422 2.7.7.7 | Details
63 1NJW 3 A DNA POLYMERASE I BACILLUS FRAGMENT (ANALOGOUS TO THE E. COLI KLENOW FRAGMENT) 1422 2.7.7.7 | Details
64 4B9L 1 A DNA POLYMERASE I 1422 2.7.7.7 | Details
65 2HW3 3 A DNA Polymerase I residues 299-876 (analogous to E Coli Klenow Fragment) 1422 2.7.7.7 | Details
66 1LV5 3 A, B DNA POLYMERASE I BACILLUS FRAGMENT (ANALOGOUS TO THE E. COLI KLENOW FRAGMENT) 1422 2.7.7.7 | Details
67 4DSI 1 A DNA polymerase RESIDUES 298-876 1422 2.7.7.7 | Details
68 2HHT 3 A DNA polymerase I residues 299-876 (analogous to E Coli Klenow Fragment) 1422 2.7.7.7 | Details
69 1U47 3 A DNA polymerase I see remark 400 analogous to the E. coli klenow fragment 1422 2.7.7.7 | Details
70 1UA1 3 A DNA polymerase I see remark 400 analogous to the E. coli klenow fragment 1422 2.7.7.7 | Details
71 4B9U 1 A DNA POLYMERASE 1422 2.7.7.7 | Details
72 3BDP 3 A PROTEIN (DNA POLYMERASE I) RESIDUES 297-876 1422 2.7.7.7 | Details
73 1NKB 3 A DNA POLYMERASE I BACILLUS FRAGMENT (ANALOGOUS TO THE E. COLI KLENOW FRAGMENT) 1422 2.7.7.7 | Details
74 4O0I 1 A DNA polymerase I 1422 2.7.7.7 | Details
75 1U48 3 A DNA polymerase I see remark 400 analogous to the E. coli klenow fragment 1422 2.7.7.7 | Details
76 4B9N 1 A DNA POLYMERASE 1422 2.7.7.7 | Details
77 1NJY 3 A DNA POLYMERASE I BACILLUS FRAGMENT (ANALOGOUS TO THE E. COLI KLENOW FRAGMENT) 1422 2.7.7.7 | Details
78 4DSK 3 A DNA polymerase RESIDUES 298-876 1422 2.7.7.7 | Details
79 3EYZ 1 A DNA polymerase I 1422 2.7.7.7 | Details
80 1UA0 3 A DNA polymerase I see remark 400 analogous to the E. coli klenow fragment 1422 2.7.7.7 | Details
81 2Y1J 1 A DNA POLYMERASE I RESIDUES 297-876 1422 2.7.7.7 | Details
82 1NK5 3 A DNA POLYMERASE I BACILLUS FRAGMENT (ANALOGOUS TO THE E. COLI KLENOW FRAGMENT) 1422 2.7.7.7 | Details
83 1NJZ 3 A DNA POLYMERASE I BACILLUS FRAGMENT (ANALOGOUS TO THE E. COLI KLENOW FRAGMENT) 1422 2.7.7.7 | Details
84 1U49 3 A DNA polymerase I see remark 400 analogous to the E. coli klenow fragment 1422 2.7.7.7 | Details
85 2XY5 1 A DNA POLYMERASE I 1422 2.7.7.7 | Details
86 1NK6 3 A DNA POLYMERASE I BACILLUS FRAGMENT (ANALOGOUS TO THE E. COLI KLENOW FRAGMENT) 1422 2.7.7.7 | Details
87 2HHX 3 A DNA Polymerase I residues 299-876 (Analogous to E Coli Klenow Fragment) 1422 2.7.7.7 | Details
88 2XY6 1 A DNA POLYMERASE I 1422 2.7.7.7 | Details
89 2HVH 3 A, D DNA Polymerase I residues 299-876 (analogous to E. coli Klenow fragment) 1422 2.7.7.7 | Details
90 4DSL 1 A DNA polymerase RESIDUES 298-876 1422 2.7.7.7 | Details
91 4B9T 1 A DNA POLYMERASE 1422 2.7.7.7 | Details
92 2XO7 1 A DNA POLYMERASE I RESIDUES 297-876 1422 2.7.7.7 | Details
93 4DSJ 1 A, B DNA polymerase RESIDUES 298-876 1422 2.7.7.7 | Details
94 2Y1I 1 A DNA POLYMERASE I RESIDUES 297-876 1422 2.7.7.7 | Details
95 2XY7 1 A DNA POLYMERASE I 1422 2.7.7.7 | Details