Sequence Similarity Clusters for the Entities in PDB 1NJT

Entity #1 | Chains: A,B,C,D
Capsid protein P40 protein, length: 256 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 6617
95 % 10 15 1564 Flexibility: Low
Max RMSD: 3.1, Avg RMSD: 0.9
PDBFlex
90 % 10 15 1596
70 % 10 15 1601
50 % 10 15 1657
40 % 10 15 1671
30 % 13 18 1381
Entity #2 | Chains: E,F,G,H
Peptidomimetic Inhibitor protein, length: 6 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 2PBK 1 A, B KSHV protease 37296
2 1WPO 1 A, B HUMAN CYTOMEGALOVIRUS PROTEASE 10359 3.4.21 | Details
3 1IED 1 A, B CAPSID PROTEIN P40: ASSEMBLIN PROTEASE RESIDUES 1-256 10359 3.4.21.97 | Details
4 1IEG 1 A, B CAPSID PROTEIN P40: ASSEMBLIN PROTEASE RESIDUES 1-256 10359 3.4.21.97 | Details
5 1O6E 1 A, B CAPSID PROTEIN P40 COAT PROTEIN VP24 (PROTEASE) DOMAIN, RESIDUES 1-235 10376 3.4.21.97 | Details
6 1ID4 1 A, B CAPSID PROTEIN P40: ASSEMBLIN PROTEASE RESIDUES 1-256 10359 3.4.21.97 | Details
7 1FL1 1 A, B PROTEASE 37296
8 1IEC 1 A, B CAPSID PROTEIN P40: ASSEMBLIN PROTEASE RESIDUES 1-256 10359 3.4.21.97 | Details
9 1LAY 1 A CYTOMEGALOVIRUS PROTEASE 10358 3.4.21 | Details
10 1JQ6 1 A ASSEMBLIN 10359 3.4.21.97 | Details
11 1IEF 1 A, B CAPSID PROTEIN P40: ASSEMBLIN PROTEASE RESIDUES 1-256 10359 3.4.21.97 | Details
12 1CMV 1 A, B HUMAN CYTOMEGALOVIRUS PROTEASE 10359 3.4.21 | Details
13 1NJT 1 A, B, C, D Capsid protein P40 Assemblin 10359 3.4.21.97 | Details
14 1NKK 1 A, B, C, D Capsid protein P40 Assemblin 10359 3.4.21.97 | Details
15 1NJU 1 A, B, C, D Assemblin 10359 3.4.21.97 | Details
16 2WPO 1 A, B, C, D HUMAN CYTOMEGALOVIRUS PROTEASE 10359 3.4.21 | Details
17 1NKM 1 A, B Assemblin 10359 3.4.21.97 | Details
18 1JQ7 1 A, B ASSEMBLIN 10359 3.4.21.97 | Details