Sequence Similarity Clusters for the Entities in PDB 1NJT

Entity #1 | Chains: A,B,C,D
Capsid protein P40 protein, length: 256 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 5 4148
95 % 10 15 1661 Flexibility: Low
Max RMSD: 3.1, Avg RMSD: 0.9
PDBFlex
90 % 10 15 1697
70 % 10 15 1737
50 % 10 15 1774
40 % 10 15 1765
30 % 18 24 1188
Entity #2 | Chains: E,F,G,H
Peptidomimetic Inhibitor protein, length: 6 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 2PBK 1 A, B KSHV protease 37296
2 4V08 1 A, B UL26 N-TERMINAL (HIS)6-TAG WITH THROMBIN-LINKER RESIDUES 1-224 10345 3.4.21.97 | Details
3 4V0T 1 A, B UL26 N-TERMINAL (HIS)6-TAG WITH THROMBIN-LINKER RESIDUES 1-224 10345 3.4.21.97 | Details
4 4V07 1 A, B UL26 N-TERMINAL (HIS)6-TAG WITH THROMBIN-LINKER RESIDUES 1-224 10345 3.4.21.97 | Details
5 1WPO 1 A, B HUMAN CYTOMEGALOVIRUS PROTEASE 10359 3.4.21 | Details
6 1IED 1 A, B CAPSID PROTEIN P40: ASSEMBLIN PROTEASE RESIDUES 1-256 10359 3.4.21.97 | Details
7 1IEG 1 A, B CAPSID PROTEIN P40: ASSEMBLIN PROTEASE RESIDUES 1-256 10359 3.4.21.97 | Details
8 1O6E 1 A, B CAPSID PROTEIN P40 COAT PROTEIN VP24 (PROTEASE) DOMAIN, RESIDUES 1-235 10376 3.4.21.97 | Details
9 1ID4 1 A, B CAPSID PROTEIN P40: ASSEMBLIN PROTEASE RESIDUES 1-256 10359 3.4.21.97 | Details
10 1FL1 1 A, B PROTEASE 37296
11 1IEC 1 A, B CAPSID PROTEIN P40: ASSEMBLIN PROTEASE RESIDUES 1-256 10359 3.4.21.97 | Details
12 1LAY 1 A CYTOMEGALOVIRUS PROTEASE 10358 3.4.21 | Details
13 1JQ6 1 A ASSEMBLIN 10359 3.4.21.97 | Details
14 1IEF 1 A, B CAPSID PROTEIN P40: ASSEMBLIN PROTEASE RESIDUES 1-256 10359 3.4.21.97 | Details
15 1CMV 1 A, B HUMAN CYTOMEGALOVIRUS PROTEASE 10359 3.4.21 | Details
16 1AT3 1 A, B HERPES SIMPLEX VIRUS TYPE II PROTEASE DIISOPROPYL PHOSPHATE COVALENTLY BOUND TO ACTIVE SITE SER 129 10310
17 4CX8 1 A, B PSEUDORABIES VIRUS PROTEASE N-TERMINAL (HIS)6-TAG WITH THROMBIN-LINKER RESIDUES 1-224 10345 3.4.21.97 | Details
18 1NJT 1 A, B, C, D Capsid protein P40 Assemblin 10359 3.4.21.97 | Details
19 1NKK 1 A, B, C, D Capsid protein P40 Assemblin 10359 3.4.21.97 | Details
20 1NJU 1 A, B, C, D Assemblin 10359 3.4.21.97 | Details
21 2WPO 1 A, B, C, D HUMAN CYTOMEGALOVIRUS PROTEASE 10359 3.4.21 | Details
22 1NKM 1 A, B Assemblin 10359 3.4.21.97 | Details
23 1VZV 1 A VARICELLA-ZOSTER VIRUS PROTEASE RESIDUES 10 - 236 10335 3.4.21 | Details
24 1JQ7 1 A, B ASSEMBLIN 10359 3.4.21.97 | Details