Sequence Similarity Clusters for the Entities in PDB 1NJT

Entity #1 | Chains: A,B,C,D
Capsid protein P40 protein, length: 256 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 6387
95 % 10 15 1513 Flexibility: Low
Max RMSD: 3.1, Avg RMSD: 0.9
PDBFlex
90 % 10 15 1543
70 % 10 15 1546
50 % 10 15 1600
40 % 10 15 1617
30 % 13 18 1345
Entity #2 | Chains: E,F,G,H
Peptidomimetic Inhibitor protein, length: 6 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures