Sequence Similarity Clusters for the Entities in PDB 1NJP

Entity #1 | Chains: 0
23S ribosomal RNA rna, length: 2880 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: 5
tRNA acceptor stem mimic rna, length: 35 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: K
50S ribosomal protein L16 protein, length: 141 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 13 27 1275
95 % 13 27 1723 Flexibility: Low
Max RMSD: 5.2, Avg RMSD: 2.6
PDBFlex
90 % 13 27 1760
70 % 137 180 89
50 % 172 335 56
40 % 172 335 71
30 % 172 335 83
Entity #4 | Chains: T
GENERAL STRESS PROTEIN CTC protein, length: 237 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 11 25 1686
95 % 11 25 2227 Flexibility: Low
Max RMSD: 6.5, Avg RMSD: 1.8
PDBFlex
90 % 11 25 2295
70 % 11 25 2293
50 % 11 25 2274
40 % 11 25 2268
30 % 11 25 2175

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.