1NJM

The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with a tRNA acceptor stem mimic (ASM) and the antibiotic sparsomycin


Sequence Similarity Clusters for the Entities in PDB 1NJM

Entity #1 | Chains: 0
23S ribosomal RNA rna, length: 2880 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: 5
tRNA acceptor stem mimic rna, length: 35 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: K
50S ribosomal protein L16 protein, length: 141 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 23 27 1264
95 % 23 27 1710
90 % 23 27 1746
70 % 160 180 89
50 % 207 324 60
40 % 207 324 74
30 % 207 324 86
Entity #4 | Chains: T
GENERAL STRESS PROTEIN CTC protein, length: 237 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 20 25 1670
95 % 20 25 2210
90 % 20 25 2277
70 % 20 25 2278
50 % 20 25 2258
40 % 20 25 2253
30 % 20 25 2159

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.