Sequence Similarity Clusters for the Entities in PDB 1NJI

Entity #1 | Chains: A
23S ribosomal RNA rna, length: 2922 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: J
50S ribosomal protein L10e protein, length: 167 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 12 20 2480
95 % 12 20 3121
90 % 12 20 3166
70 % 13 27 2210
50 % 55 74 742
40 % 55 79 723
30 % 55 79 719
Entity #11 | Chains: K
50S ribosomal protein L13P protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 55 74 449
95 % 55 74 620
90 % 55 74 648
70 % 55 74 693
50 % 55 74 747
40 % 56 77 745
30 % 56 78 731
Entity #12 | Chains: L
50S ribosomal protein L14P protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 32 44 865
95 % 55 68 698
90 % 55 68 728
70 % 55 68 780
50 % 63 180 201
40 % 122 539 20
30 % 122 539 33
Entity #13 | Chains: M
50S ribosomal protein L15P protein, length: 164 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 55 74 447
95 % 55 74 619
90 % 55 74 647
70 % 55 74 690
50 % 55 74 743
40 % 55 74 778
30 % 121 519 37
Entity #14 | Chains: N
50S ribosomal protein L15E protein, length: 194 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 12 20 2464
95 % 12 20 3099
90 % 12 20 3145
70 % 55 68 771
50 % 63 176 205
40 % 63 176 228
30 % 63 176 240
Entity #15 | Chains: O
50S ribosomal protein L18P protein, length: 186 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 55 74 445
95 % 55 74 617
90 % 55 74 645
70 % 55 74 687
50 % 55 76 718
40 % 55 76 753
30 % 55 79 717
Entity #16 | Chains: P
50S ribosomal protein L18E protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 55 68 513
95 % 55 68 700
90 % 55 68 731
70 % 55 68 783
50 % 55 70 793
40 % 55 70 830
30 % 55 70 817
Entity #17 | Chains: Q
50S ribosomal protein L19E protein, length: 148 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 13 21 2259
95 % 55 68 697
90 % 55 68 727
70 % 55 68 778
50 % 55 68 822
40 % 55 72 805
30 % 55 72 796
Entity #18 | Chains: R
50S ribosomal protein L21e protein, length: 95 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 55 68 514
95 % 55 68 702
90 % 55 68 733
70 % 55 68 785
50 % 55 70 794
40 % 55 70 831
30 % 55 71 807
Entity #19 | Chains: S
50S ribosomal protein L22P protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 54 67 523
95 % 55 68 695
90 % 55 68 725
70 % 55 68 775
50 % 55 68 819
40 % 55 68 856
30 % 63 179 231
Entity #2 | Chains: B
5S ribosomal RNA rna, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: T
50S ribosomal protein L23P protein, length: 84 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 55 74 452
95 % 55 74 623
90 % 55 74 651
70 % 55 74 697
50 % 55 76 723
40 % 55 78 734
30 % 113 422 59
Entity #21 | Chains: U
50S ribosomal protein L24P protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 55 74 451
95 % 55 74 622
90 % 55 74 650
70 % 55 74 695
50 % 63 183 199
40 % 63 184 217
30 % 63 184 227
Entity #22 | Chains: V
50S ribosomal protein L24E protein, length: 66 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 52 70 483
95 % 52 70 668
90 % 52 70 694
70 % 52 70 746
50 % 52 70 795
40 % 52 70 832
30 % 52 70 819
Entity #23 | Chains: W
50S ribosomal protein L29P protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 55 74 453
95 % 55 74 624
90 % 55 74 652
70 % 55 74 698
50 % 55 74 748
40 % 113 384 58
30 % 113 410 65
Entity #24 | Chains: X
50S ribosomal protein L30P protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 55 68 510
95 % 55 68 696
90 % 55 68 726
70 % 55 68 776
50 % 55 68 820
40 % 55 70 828
30 % 55 71 805
Entity #25 | Chains: Y
50S ribosomal protein L31E protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 55 68 516
95 % 55 68 704
90 % 55 68 735
70 % 55 68 787
50 % 55 68 827
40 % 55 68 860
30 % 55 68 844
Entity #26 | Chains: Z
50S ribosomal protein L32E protein, length: 240 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 51 63 560
95 % 51 63 779
90 % 51 63 807
70 % 51 63 849
50 % 51 63 898
40 % 51 63 924
30 % 51 63 905
Entity #27 | Chains: 1
50S ribosomal protein L37AE protein, length: 73 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 12 20 2543
95 % 12 20 3168
90 % 12 20 3212
70 % 13 21 2958
50 % 19 30 1979
40 % 27 134 287
30 % 48 157 261
Entity #28 | Chains: 2
50S ribosomal protein L37e protein, length: 56 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 55 68 517
95 % 55 68 705
90 % 55 68 736
70 % 55 68 788
50 % 55 69 809
40 % 55 69 844
30 % 55 69 833
Entity #29 | Chains: 3
50S ribosomal protein L39e protein, length: 48 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 12 20 2548
95 % 55 68 706
90 % 55 68 737
70 % 55 68 789
50 % 63 177 203
40 % 63 177 225
30 % 63 177 236
Entity #3 | Chains: C
50S ribosomal protein L2P protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 13 21 2242
95 % 55 68 692
90 % 55 68 721
70 % 55 68 770
50 % 63 175 204
40 % 63 177 224
30 % 63 177 235
Entity #30 | Chains: 4
50S ribosomal protein L44E protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 55 68 515
95 % 55 68 703
90 % 55 68 734
70 % 55 68 786
50 % 55 68 826
40 % 55 68 859
30 % 63 173 244
Entity #4 | Chains: D
50S ribosomal protein L3P protein, length: 337 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 54 67 521
95 % 55 74 609
90 % 55 74 639
70 % 55 74 683
50 % 55 74 736
40 % 63 184 215
30 % 63 184 225
Entity #5 | Chains: E
50S ribosomal protein L4E protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 44 859
95 % 55 74 613
90 % 55 74 643
70 % 55 74 685
50 % 55 74 738
40 % 55 76 751
30 % 56 78 727
Entity #6 | Chains: F
50S ribosomal protein L5P protein, length: 176 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 55 74 446
95 % 55 74 618
90 % 55 74 646
70 % 55 74 688
50 % 55 74 741
40 % 64 184 216
30 % 64 184 226
Entity #7 | Chains: G
50S ribosomal protein L6P protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 55 68 509
95 % 55 68 694
90 % 55 68 723
70 % 55 68 773
50 % 55 68 818
40 % 63 178 222
30 % 122 530 35
Entity #8 | Chains: H
50S ribosomal protein L7Ae protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 13 21 2272
95 % 13 21 2920
90 % 55 68 730
70 % 55 68 782
50 % 79 105 351
40 % 87 124 285
30 % 87 126 289
Entity #9 | Chains: I
Acidic ribosomal protein P0 homolog protein, length: 348 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 44 852
95 % 52 64 754
90 % 52 64 786
70 % 52 64 826
50 % 52 64 879
40 % 52 64 903
30 % 52 65 877

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.