Sequence Similarity Clusters for the Entities in PDB 1NJI

Entity #1 | Chains: A
23S ribosomal RNA rna, length: 2922 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: J
50S ribosomal protein L10e protein, length: 167 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 12 20 2392
95 % 12 20 3028
90 % 12 20 3070
70 % 13 27 2134
50 % 55 74 695
40 % 55 79 679
30 % 55 79 680
Entity #11 | Chains: K
50S ribosomal protein L13P protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 55 74 419
95 % 55 74 589
90 % 55 74 620
70 % 55 74 654
50 % 55 74 700
40 % 56 77 702
30 % 56 78 689
Entity #12 | Chains: L
50S ribosomal protein L14P protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 32 44 829
95 % 55 68 665
90 % 55 68 692
70 % 55 68 744
50 % 62 176 200
40 % 62 176 221
30 % 119 513 31
Entity #13 | Chains: M
50S ribosomal protein L15P protein, length: 164 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 55 74 418
95 % 55 74 588
90 % 55 74 619
70 % 55 74 651
50 % 55 74 696
40 % 55 74 735
30 % 118 495 37
Entity #14 | Chains: N
50S ribosomal protein L15E protein, length: 194 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 12 20 2376
95 % 12 20 3007
90 % 12 20 3050
70 % 55 68 736
50 % 62 172 209
40 % 62 172 233
30 % 62 172 238
Entity #15 | Chains: O
50S ribosomal protein L18P protein, length: 186 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 55 74 416
95 % 55 74 586
90 % 55 74 617
70 % 55 74 648
50 % 55 76 666
40 % 55 76 709
30 % 55 79 678
Entity #16 | Chains: P
50S ribosomal protein L18E protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 55 68 475
95 % 55 68 666
90 % 55 68 694
70 % 55 68 746
50 % 55 70 763
40 % 55 70 799
30 % 55 70 788
Entity #17 | Chains: Q
50S ribosomal protein L19E protein, length: 148 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 13 21 2182
95 % 55 68 664
90 % 55 68 690
70 % 55 68 742
50 % 55 68 793
40 % 55 72 764
30 % 55 72 755
Entity #18 | Chains: R
50S ribosomal protein L21e protein, length: 95 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 55 68 476
95 % 55 68 668
90 % 55 68 696
70 % 55 68 749
50 % 55 70 765
40 % 55 70 801
30 % 55 71 772
Entity #19 | Chains: S
50S ribosomal protein L22P protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 54 67 489
95 % 55 68 662
90 % 55 68 688
70 % 55 68 739
50 % 55 68 790
40 % 55 68 825
30 % 62 175 232
Entity #2 | Chains: B
5S ribosomal RNA rna, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: T
50S ribosomal protein L23P protein, length: 84 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 55 74 423
95 % 55 74 592
90 % 55 74 623
70 % 55 74 657
50 % 55 76 670
40 % 55 78 692
30 % 111 402 60
Entity #21 | Chains: U
50S ribosomal protein L24P protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 55 74 422
95 % 55 74 591
90 % 55 74 622
70 % 55 74 656
50 % 62 180 199
40 % 62 180 217
30 % 62 180 226
Entity #22 | Chains: V
50S ribosomal protein L24E protein, length: 66 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 52 70 454
95 % 52 70 638
90 % 52 70 663
70 % 52 70 717
50 % 52 70 766
40 % 52 70 804
30 % 52 70 792
Entity #23 | Chains: W
50S ribosomal protein L29P protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 55 74 424
95 % 55 74 593
90 % 55 74 624
70 % 55 74 658
50 % 55 74 701
40 % 55 74 738
30 % 55 74 730
Entity #24 | Chains: X
50S ribosomal protein L30P protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 55 68 473
95 % 55 68 663
90 % 55 68 689
70 % 55 68 740
50 % 55 68 791
40 % 55 70 796
30 % 55 71 769
Entity #25 | Chains: Y
50S ribosomal protein L31E protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 55 68 478
95 % 55 68 670
90 % 55 68 698
70 % 55 68 751
50 % 55 68 796
40 % 55 68 829
30 % 55 68 814
Entity #26 | Chains: Z
50S ribosomal protein L32E protein, length: 240 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 51 63 546
95 % 51 63 757
90 % 51 63 785
70 % 51 63 833
50 % 51 63 871
40 % 51 63 899
30 % 51 63 885
Entity #27 | Chains: 1
50S ribosomal protein L37AE protein, length: 73 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 12 20 2455
95 % 12 20 3076
90 % 12 20 3117
70 % 13 21 2865
50 % 19 30 1917
40 % 26 129 302
30 % 47 152 267
Entity #28 | Chains: 2
50S ribosomal protein L37e protein, length: 56 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 55 68 480
95 % 55 68 673
90 % 55 68 701
70 % 55 68 755
50 % 55 69 778
40 % 55 69 815
30 % 55 69 804
Entity #29 | Chains: 3
50S ribosomal protein L39e protein, length: 48 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 12 20 2460
95 % 55 68 674
90 % 55 68 702
70 % 55 68 756
50 % 62 173 205
40 % 62 173 228
30 % 62 173 235
Entity #3 | Chains: C
50S ribosomal protein L2P protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 13 21 2166
95 % 55 68 658
90 % 55 68 684
70 % 55 68 734
50 % 62 171 208
40 % 62 173 227
30 % 62 173 234
Entity #30 | Chains: 4
50S ribosomal protein L44E protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 55 68 477
95 % 55 68 669
90 % 55 68 697
70 % 55 68 750
50 % 55 68 795
40 % 55 68 828
30 % 62 169 242
Entity #4 | Chains: D
50S ribosomal protein L3P protein, length: 337 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 54 67 487
95 % 55 74 577
90 % 55 74 609
70 % 55 74 643
50 % 55 74 689
40 % 62 180 215
30 % 62 180 224
Entity #5 | Chains: E
50S ribosomal protein L4E protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 44 823
95 % 55 74 582
90 % 55 74 615
70 % 55 74 646
50 % 55 74 691
40 % 55 76 707
30 % 56 78 686
Entity #6 | Chains: F
50S ribosomal protein L5P protein, length: 176 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 55 74 417
95 % 55 74 587
90 % 55 74 618
70 % 55 74 649
50 % 55 74 694
40 % 63 180 216
30 % 63 180 225
Entity #7 | Chains: G
50S ribosomal protein L6P protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 55 68 472
95 % 55 68 661
90 % 55 68 687
70 % 55 68 738
50 % 55 68 789
40 % 62 174 226
30 % 119 504 34
Entity #8 | Chains: H
50S ribosomal protein L7Ae protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 13 21 2194
95 % 13 21 2836
90 % 55 68 693
70 % 55 68 745
50 % 79 105 322
40 % 87 122 280
30 % 87 124 282
Entity #9 | Chains: I
Acidic ribosomal protein P0 homolog protein, length: 348 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 44 815
95 % 52 64 734
90 % 52 64 763
70 % 52 64 810
50 % 52 64 856
40 % 52 64 881
30 % 52 65 855

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.