Sequence Similarity Clusters for the Entities in PDB 1NJI

Entity #1 | Chains: A
23S ribosomal RNA rna, length: 2922 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: J
50S ribosomal protein L10e protein, length: 167 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 12 20 2313
95 % 12 20 2941
90 % 12 20 2985
70 % 13 27 2056
50 % 56 74 665
40 % 56 79 654
30 % 56 79 666
Entity #11 | Chains: K
50S ribosomal protein L13P protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 56 74 392
95 % 56 74 552
90 % 56 74 585
70 % 56 74 620
50 % 56 74 669
40 % 57 77 679
30 % 57 78 673
Entity #12 | Chains: L
50S ribosomal protein L14P protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 33 44 799
95 % 56 68 632
90 % 56 68 659
70 % 56 68 700
50 % 63 168 203
40 % 63 168 224
30 % 120 495 30
Entity #13 | Chains: M
50S ribosomal protein L15P protein, length: 164 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 56 74 391
95 % 56 74 551
90 % 56 74 584
70 % 56 74 617
50 % 56 74 666
40 % 56 74 708
30 % 119 481 35
Entity #14 | Chains: N
50S ribosomal protein L15E protein, length: 194 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 12 20 2298
95 % 12 20 2922
90 % 12 20 2968
70 % 56 68 691
50 % 63 164 212
40 % 63 164 234
30 % 63 164 239
Entity #15 | Chains: O
50S ribosomal protein L18P protein, length: 186 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 56 74 389
95 % 56 74 549
90 % 56 74 582
70 % 56 74 614
50 % 56 76 645
40 % 56 76 689
30 % 56 79 663
Entity #16 | Chains: P
50S ribosomal protein L18E protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 56 68 448
95 % 56 68 633
90 % 56 68 661
70 % 56 68 702
50 % 56 70 720
40 % 56 70 760
30 % 56 70 760
Entity #17 | Chains: Q
50S ribosomal protein L19E protein, length: 148 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 13 21 2115
95 % 56 68 631
90 % 56 68 657
70 % 56 68 698
50 % 56 68 750
40 % 56 72 729
30 % 56 72 727
Entity #18 | Chains: R
50S ribosomal protein L21e protein, length: 95 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 56 68 450
95 % 56 68 636
90 % 56 68 663
70 % 56 68 707
50 % 56 70 721
40 % 56 70 761
30 % 56 71 742
Entity #19 | Chains: S
50S ribosomal protein L22P protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 55 67 458
95 % 56 68 628
90 % 56 68 654
70 % 56 68 694
50 % 56 68 747
40 % 56 68 780
30 % 63 167 234
Entity #2 | Chains: B
5S ribosomal RNA rna, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: T
50S ribosomal protein L23P protein, length: 84 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 56 74 398
95 % 56 74 558
90 % 56 74 589
70 % 56 74 623
50 % 56 76 647
40 % 56 78 666
30 % 112 396 56
Entity #21 | Chains: U
50S ribosomal protein L24P protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 56 74 397
95 % 56 74 557
90 % 56 74 588
70 % 56 74 622
50 % 63 172 198
40 % 63 172 219
30 % 63 172 227
Entity #22 | Chains: V
50S ribosomal protein L24E protein, length: 66 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 53 70 430
95 % 53 70 609
90 % 53 70 636
70 % 53 70 670
50 % 53 70 722
40 % 53 70 763
30 % 53 70 762
Entity #23 | Chains: W
50S ribosomal protein L29P protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 56 74 399
95 % 56 74 559
90 % 56 74 590
70 % 56 74 624
50 % 56 74 671
40 % 56 74 712
30 % 56 74 711
Entity #24 | Chains: X
50S ribosomal protein L30P protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 56 68 446
95 % 56 68 630
90 % 56 68 656
70 % 56 68 696
50 % 56 68 748
40 % 56 70 757
30 % 56 71 740
Entity #25 | Chains: Y
50S ribosomal protein L31E protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 56 68 452
95 % 56 68 638
90 % 56 68 665
70 % 56 68 709
50 % 56 68 754
40 % 56 68 784
30 % 56 68 785
Entity #26 | Chains: Z
50S ribosomal protein L32E protein, length: 240 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 52 63 490
95 % 52 63 696
90 % 52 63 727
70 % 52 63 773
50 % 52 63 818
40 % 52 63 841
30 % 52 63 838
Entity #27 | Chains: 1
50S ribosomal protein L37AE protein, length: 73 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 12 20 2373
95 % 12 20 2989
90 % 12 20 3031
70 % 13 21 2783
50 % 19 30 1856
40 % 26 121 306
30 % 47 144 268
Entity #28 | Chains: 2
50S ribosomal protein L37e protein, length: 56 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 56 68 453
95 % 56 68 639
90 % 56 68 666
70 % 56 68 711
50 % 56 69 733
40 % 56 69 774
30 % 56 69 776
Entity #29 | Chains: 3
50S ribosomal protein L39e protein, length: 48 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 12 20 2379
95 % 56 68 640
90 % 56 68 667
70 % 56 68 712
50 % 63 165 205
40 % 63 165 229
30 % 63 165 236
Entity #3 | Chains: C
50S ribosomal protein L2P protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 13 21 2095
95 % 56 68 624
90 % 56 68 651
70 % 56 68 690
50 % 63 163 211
40 % 63 165 228
30 % 63 165 235
Entity #30 | Chains: 4
50S ribosomal protein L44E protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 56 68 451
95 % 56 68 637
90 % 56 68 664
70 % 56 68 708
50 % 56 68 753
40 % 56 68 783
30 % 63 161 243
Entity #4 | Chains: D
50S ribosomal protein L3P protein, length: 337 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 55 67 456
95 % 56 74 543
90 % 56 74 578
70 % 56 74 609
50 % 56 74 659
40 % 63 172 217
30 % 63 172 225
Entity #5 | Chains: E
50S ribosomal protein L4E protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 44 792
95 % 56 74 545
90 % 56 74 580
70 % 56 74 613
50 % 56 74 662
40 % 56 76 687
30 % 56 77 681
Entity #6 | Chains: F
50S ribosomal protein L5P protein, length: 176 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 56 74 390
95 % 56 74 550
90 % 56 74 583
70 % 56 74 615
50 % 56 74 664
40 % 64 172 218
30 % 64 172 226
Entity #7 | Chains: G
50S ribosomal protein L6P protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 56 68 444
95 % 56 68 627
90 % 56 68 653
70 % 56 68 693
50 % 56 68 746
40 % 63 166 227
30 % 120 486 34
Entity #8 | Chains: H
50S ribosomal protein L7Ae protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 13 21 2125
95 % 13 21 2752
90 % 56 68 660
70 % 56 68 701
50 % 80 105 307
40 % 88 120 278
30 % 88 122 277
Entity #9 | Chains: I
Acidic ribosomal protein P0 homolog protein, length: 348 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 44 786
95 % 53 64 672
90 % 53 64 702
70 % 53 64 751
50 % 53 64 800
40 % 53 64 826
30 % 53 65 815

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.