Sequence Similarity Clusters for the Entities in PDB 1NJI

Entity #1 | Chains: A
23S ribosomal RNA rna, length: 2922 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: J
50S ribosomal protein L10e protein, length: 167 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 12 20 2351
95 % 12 20 2980
90 % 12 20 3024
70 % 13 27 2100
50 % 56 74 684
40 % 56 79 666
30 % 56 79 673
Entity #11 | Chains: K
50S ribosomal protein L13P protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 56 74 414
95 % 56 74 577
90 % 56 74 607
70 % 56 74 640
50 % 56 74 689
40 % 57 77 691
30 % 57 78 682
Entity #12 | Chains: L
50S ribosomal protein L14P protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 33 44 823
95 % 56 68 652
90 % 56 68 679
70 % 56 68 722
50 % 63 175 200
40 % 63 175 220
30 % 120 509 30
Entity #13 | Chains: M
50S ribosomal protein L15P protein, length: 164 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 56 74 413
95 % 56 74 576
90 % 56 74 606
70 % 56 74 637
50 % 56 74 685
40 % 56 74 724
30 % 119 491 36
Entity #14 | Chains: N
50S ribosomal protein L15E protein, length: 194 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 12 20 2336
95 % 12 20 2961
90 % 12 20 3007
70 % 56 68 714
50 % 63 171 205
40 % 63 171 229
30 % 63 171 235
Entity #15 | Chains: O
50S ribosomal protein L18P protein, length: 186 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 56 74 411
95 % 56 74 574
90 % 56 74 604
70 % 56 74 634
50 % 56 76 659
40 % 56 76 700
30 % 56 79 670
Entity #16 | Chains: P
50S ribosomal protein L18E protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 56 68 463
95 % 56 68 653
90 % 56 68 681
70 % 56 68 724
50 % 56 70 746
40 % 56 70 784
30 % 56 70 779
Entity #17 | Chains: Q
50S ribosomal protein L19E protein, length: 148 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 13 21 2151
95 % 56 68 651
90 % 56 68 677
70 % 56 68 720
50 % 56 68 773
40 % 56 72 751
30 % 56 72 747
Entity #18 | Chains: R
50S ribosomal protein L21e protein, length: 95 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 56 68 465
95 % 56 68 656
90 % 56 68 683
70 % 56 68 728
50 % 56 70 748
40 % 56 70 786
30 % 56 71 761
Entity #19 | Chains: S
50S ribosomal protein L22P protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 55 67 478
95 % 56 68 649
90 % 56 68 675
70 % 56 68 717
50 % 56 68 770
40 % 56 68 806
30 % 63 174 228
Entity #2 | Chains: B
5S ribosomal RNA rna, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: T
50S ribosomal protein L23P protein, length: 84 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 56 74 419
95 % 56 74 581
90 % 56 74 610
70 % 56 74 643
50 % 56 76 662
40 % 56 78 677
30 % 112 399 58
Entity #21 | Chains: U
50S ribosomal protein L24P protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 56 74 417
95 % 56 74 579
90 % 56 74 609
70 % 56 74 642
50 % 63 179 194
40 % 63 179 212
30 % 63 179 224
Entity #22 | Chains: V
50S ribosomal protein L24E protein, length: 66 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 53 70 444
95 % 53 70 627
90 % 53 70 654
70 % 53 70 697
50 % 53 70 749
40 % 53 70 789
30 % 53 70 783
Entity #23 | Chains: W
50S ribosomal protein L29P protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 56 74 421
95 % 56 74 582
90 % 56 74 611
70 % 56 74 644
50 % 56 74 690
40 % 56 74 727
30 % 56 74 725
Entity #24 | Chains: X
50S ribosomal protein L30P protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 56 68 461
95 % 56 68 650
90 % 56 68 676
70 % 56 68 718
50 % 56 68 771
40 % 56 70 781
30 % 56 71 758
Entity #25 | Chains: Y
50S ribosomal protein L31E protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 56 68 467
95 % 56 68 658
90 % 56 68 685
70 % 56 68 730
50 % 56 68 777
40 % 56 68 811
30 % 56 68 804
Entity #26 | Chains: Z
50S ribosomal protein L32E protein, length: 240 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 52 63 531
95 % 52 63 742
90 % 52 63 772
70 % 52 63 814
50 % 52 63 858
40 % 52 63 879
30 % 52 63 868
Entity #27 | Chains: 1
50S ribosomal protein L37AE protein, length: 73 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 12 20 2411
95 % 12 20 3027
90 % 12 20 3068
70 % 13 21 2821
50 % 19 30 1890
40 % 26 128 296
30 % 47 151 267
Entity #28 | Chains: 2
50S ribosomal protein L37e protein, length: 56 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 56 68 468
95 % 56 68 659
90 % 56 68 686
70 % 56 68 733
50 % 56 69 758
40 % 56 69 799
30 % 56 69 795
Entity #29 | Chains: 3
50S ribosomal protein L39e protein, length: 48 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 12 20 2418
95 % 56 68 660
90 % 56 68 687
70 % 56 68 734
50 % 63 172 202
40 % 63 172 227
30 % 63 172 233
Entity #3 | Chains: C
50S ribosomal protein L2P protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 13 21 2135
95 % 56 68 646
90 % 56 68 672
70 % 56 68 713
50 % 63 170 204
40 % 63 172 226
30 % 63 172 231
Entity #30 | Chains: 4
50S ribosomal protein L44E protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 56 68 466
95 % 56 68 657
90 % 56 68 684
70 % 56 68 729
50 % 56 68 776
40 % 56 68 810
30 % 63 168 241
Entity #4 | Chains: D
50S ribosomal protein L3P protein, length: 337 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 55 67 475
95 % 56 74 565
90 % 56 74 596
70 % 56 74 629
50 % 56 74 679
40 % 63 179 210
30 % 63 179 221
Entity #5 | Chains: E
50S ribosomal protein L4E protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 44 816
95 % 56 74 569
90 % 56 74 601
70 % 56 74 633
50 % 56 74 681
40 % 56 76 698
30 % 57 78 679
Entity #6 | Chains: F
50S ribosomal protein L5P protein, length: 176 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 56 74 412
95 % 56 74 575
90 % 56 74 605
70 % 56 74 635
50 % 56 74 683
40 % 64 179 211
30 % 64 179 223
Entity #7 | Chains: G
50S ribosomal protein L6P protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 56 68 460
95 % 56 68 648
90 % 56 68 674
70 % 56 68 716
50 % 56 68 769
40 % 63 173 223
30 % 120 500 32
Entity #8 | Chains: H
50S ribosomal protein L7Ae protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 13 21 2161
95 % 13 21 2792
90 % 56 68 680
70 % 56 68 723
50 % 80 105 316
40 % 88 120 286
30 % 88 122 283
Entity #9 | Chains: I
Acidic ribosomal protein P0 homolog protein, length: 348 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 44 810
95 % 53 64 715
90 % 53 64 745
70 % 53 64 787
50 % 53 64 836
40 % 53 64 858
30 % 53 65 837

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.