Sequence Similarity Clusters for the Entities in PDB 1NJ9

Entity #1 | Chains: A,L
immunoglobulin variable chain protein, length: 212 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 40791
95 % 1 1 31067 Flexibility: Low
Max RMSD: 0.7, Avg RMSD: 0.7
PDBFlex
90 % 16 45 389
70 % 933 2287 1
50 % 1911 4633 1
40 % 1911 4633 1
30 % 2159 5461 1
Entity #2 | Chains: B,H
immunoglobulin heavy chain protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 40453
95 % 1 1 30889
90 % 1 1 29637
70 % 925 2244 2
50 % 1912 4633 1
40 % 1912 4633 1
30 % 2160 5461 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.