Sequence Similarity Clusters for the Entities in PDB 1NIW

Entity #1 | Chains: A,C,E,G
calmodulin protein, length: 148 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 55 149 96
95 % 62 187 82 Flexibility: Medium
Max RMSD: 20.3, Avg RMSD: 9.6
PDBFlex
90 % 74 200 81
70 % 75 202 96
50 % 86 235 105
40 % 97 358 41
30 % 102 385 50
Entity #2 | Chains: B,D,F,H
Nitric-oxide synthase, endothelial protein, length: 20 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 16891
95 % 1 2 15733
90 % 1 2 15442
70 % 1 2 14476
50 % 1 2 12827
40 % 1 2 11613
30 % 1 2 10097

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures