Sequence Similarity Clusters for the Entities in PDB 1NIW

Entity #1 | Chains: A,C,E,G
calmodulin protein, length: 148 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 53 141 101
95 % 60 178 90 Flexibility: Medium
Max RMSD: 20.3, Avg RMSD: 9.6
PDBFlex
90 % 72 191 87
70 % 73 193 103
50 % 84 226 112
40 % 95 349 43
30 % 100 376 51
Entity #2 | Chains: B,D,F,H
Nitric-oxide synthase, endothelial protein, length: 20 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 16612
95 % 1 2 15509
90 % 1 2 15229
70 % 1 2 14286
50 % 1 2 12667
40 % 1 2 11475
30 % 1 2 9976

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures