Sequence Similarity Clusters for the Entities in PDB 1NIW

Entity #1 | Chains: A,C,E,G
calmodulin protein, length: 148 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 61 186 60
95 % 62 190 80 Flexibility: Medium
Max RMSD: 20.3, Avg RMSD: 9.7
PDBFlex
90 % 74 203 77
70 % 75 205 93
50 % 86 238 105
40 % 98 361 40
30 % 121 432 43
Entity #2 | Chains: B,D,F,H
Nitric-oxide synthase, endothelial protein, length: 20 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 16874
95 % 1 2 15653
90 % 1 2 15324
70 % 1 2 14342
50 % 1 2 12667
40 % 1 2 11367
30 % 1 2 9651

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures