Sequence Similarity Clusters for the Entities in PDB 1NIK

Entity #1 | Chains: A
RPB1 protein, length: 1733 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 102 113 203
95 % 102 113 285
90 % 102 113 299
70 % 102 113 323
50 % 103 123 316
40 % 103 123 342
30 % 103 123 353
Entity #10 | Chains: J
DNA-directed RNA polymerase II, chain RPB10 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 107 123 159
95 % 107 123 224
90 % 107 123 235
70 % 108 133 215
50 % 116 141 243
40 % 116 141 268
30 % 116 141 283
Entity #11 | Chains: K
DNA-directed RNA polymerase II, chain RPB11 protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 102 115 200
95 % 102 115 282
90 % 102 115 295
70 % 102 115 321
50 % 102 115 345
40 % 103 116 364
30 % 103 116 375
Entity #12 | Chains: L
DNA-directed RNA polymerase II, chain RPB12 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 105 119 166
95 % 105 119 236
90 % 105 119 245
70 % 105 119 282
50 % 105 119 315
40 % 105 119 341
30 % 105 119 352
Entity #2 | Chains: B
ORF YOR151c protein, length: 1224 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 101 114 201
95 % 102 115 278
90 % 102 115 291
70 % 102 115 317
50 % 103 125 308
40 % 111 133 294
30 % 111 136 302
Entity #3 | Chains: C
DNA-directed RNA polymerase II, chain RPB3 protein, length: 318 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 100 110 207
95 % 100 110 294
90 % 100 110 309
70 % 100 110 330
50 % 101 111 349
40 % 101 111 380
30 % 101 111 388
Entity #4 | Chains: D
DNA-directed RNA polymerase II, chain RPB4 protein, length: 161 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #5 | Chains: E
DNA-directed RNA polymerase II, chain RPB5 protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 108 124 152
95 % 108 124 214
90 % 108 124 226
70 % 108 124 258
50 % 109 125 294
40 % 109 134 293
30 % 109 134 314
Entity #6 | Chains: F
DNA-directed RNA polymerase I, II and III 23 kDa polypeptide protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 105 118 168
95 % 105 118 241
90 % 105 118 251
70 % 105 118 286
50 % 106 129 280
40 % 106 129 308
30 % 106 129 328
Entity #7 | Chains: G
DNA-directed RNA polymerase II, chain RPB7 protein, length: 170 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #8 | Chains: H
DNA-directed RNA polymerase subunit RPB8 protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 106 123 158
95 % 107 124 218
90 % 107 124 229
70 % 107 124 262
50 % 107 124 305
40 % 107 124 326
30 % 108 135 308
Entity #9 | Chains: I
DNA-directed RNA polymerase II, chain RPB9 protein, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 101 114 202
95 % 101 114 284
90 % 101 114 298
70 % 101 114 322
50 % 102 115 341
40 % 102 115 368
30 % 102 118 371

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.