Sequence Similarity Clusters for the Entities in PDB 1NIK

Entity #1 | Chains: A
RPB1 protein, length: 1733 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 102 113 203
95 % 102 113 285
90 % 102 113 299
70 % 102 113 321
50 % 103 123 314
40 % 103 123 342
30 % 103 123 351
Entity #10 | Chains: J
DNA-directed RNA polymerase II, chain RPB10 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 107 123 159
95 % 107 123 222
90 % 107 123 234
70 % 108 133 214
50 % 116 141 241
40 % 116 141 267
30 % 116 141 283
Entity #11 | Chains: K
DNA-directed RNA polymerase II, chain RPB11 protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 102 115 199
95 % 102 115 280
90 % 102 115 293
70 % 102 115 318
50 % 102 115 343
40 % 103 116 361
30 % 103 116 372
Entity #12 | Chains: L
DNA-directed RNA polymerase II, chain RPB12 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 105 119 164
95 % 105 119 234
90 % 105 119 244
70 % 105 119 278
50 % 105 119 313
40 % 105 119 341
30 % 105 119 350
Entity #2 | Chains: B
ORF YOR151c protein, length: 1224 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 101 114 200
95 % 102 115 277
90 % 102 115 290
70 % 102 115 316
50 % 103 125 308
40 % 111 133 292
30 % 111 136 300
Entity #3 | Chains: C
DNA-directed RNA polymerase II, chain RPB3 protein, length: 318 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 100 110 207
95 % 100 110 294
90 % 100 110 308
70 % 100 110 329
50 % 101 111 346
40 % 101 111 379
30 % 101 111 384
Entity #4 | Chains: D
DNA-directed RNA polymerase II, chain RPB4 protein, length: 161 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #5 | Chains: E
DNA-directed RNA polymerase II, chain RPB5 protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 108 124 152
95 % 108 124 212
90 % 108 124 224
70 % 108 124 257
50 % 109 125 293
40 % 109 134 291
30 % 109 134 311
Entity #6 | Chains: F
DNA-directed RNA polymerase I, II and III 23 kDa polypeptide protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 105 118 166
95 % 105 118 239
90 % 105 118 250
70 % 105 118 282
50 % 106 129 278
40 % 106 129 305
30 % 106 129 326
Entity #7 | Chains: G
DNA-directed RNA polymerase II, chain RPB7 protein, length: 170 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #8 | Chains: H
DNA-directed RNA polymerase subunit RPB8 protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 106 123 158
95 % 107 124 216
90 % 107 124 227
70 % 107 124 261
50 % 107 124 304
40 % 107 124 326
30 % 108 135 306
Entity #9 | Chains: I
DNA-directed RNA polymerase II, chain RPB9 protein, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 101 114 202
95 % 101 114 284
90 % 101 114 298
70 % 101 114 320
50 % 102 115 339
40 % 102 115 365
30 % 102 118 367

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.