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An Information Portal to 109093 Biological Macromolecular Structures

Wild Type RNA Polymerase II
Sequence Clustering and Redundancy Reduction Results
1NIK
Sequence Clusters for the Sequence Entities in PDB 1NIK
Entity #1: Chains: A - RPB1 protein, length: 1733 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 93 101 206
95% 93 101 290
90% 93 101 305
70% 93 101 324
50% 94 102 350
40% 94 102 377
30% 94 102 382
Entity #10: Chains: J - DNA-directed RNA polymerase II, chain RPB10 protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 97 107 188
95% 97 107 267
90% 97 107 279
70% 98 108 289
50% 106 116 276
40% 106 116 306
30% 106 116 321
Entity #11: Chains: K - DNA-directed RNA polymerase II, chain RPB11 protein, length: 120 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 93 103 201
95% 93 103 286
90% 93 103 301
70% 93 103 318
50% 93 103 354
40% 94 104 372
30% 94 104 377
Entity #12: Chains: L - DNA-directed RNA polymerase II, chain RPB12 protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 97 106 190
95% 97 106 269
90% 97 106 283
70% 97 106 301
50% 97 106 330
40% 97 106 360
30% 97 106 367
Entity #2: Chains: B - ORF YOR151c protein, length: 1224 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 92 102 203
95% 93 103 283
90% 93 103 297
70% 93 103 316
50% 94 104 342
40% 102 112 320
30% 102 112 330
Entity #3: Chains: C - DNA-directed RNA polymerase II, chain RPB3 protein, length: 318 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 93 101 207
95% 93 101 291
90% 93 101 306
70% 93 101 325
50% 94 102 352
40% 94 102 380
30% 94 102 386
Entity #4: Chains: D - DNA-directed RNA polymerase II, chain RPB4 protein, length: 161 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #5: Chains: E - DNA-directed RNA polymerase II, chain RPB5 protein, length: 215 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 98 108 186
95% 98 108 259
90% 98 108 272
70% 98 108 291
50% 99 109 310
40% 99 109 338
30% 99 109 349
Entity #6: Chains: F - DNA-directed RNA polymerase I, II and III 23 kDa polypeptide protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 97 105 194
95% 97 105 278
90% 97 105 290
70% 97 105 308
50% 98 107 320
40% 98 107 352
30% 98 107 357
Entity #7: Chains: G - DNA-directed RNA polymerase II, chain RPB7 protein, length: 170 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #8: Chains: H - DNA-directed RNA polymerase subunit RPB8 protein, length: 146 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 96 107 187
95% 97 108 260
90% 97 108 273
70% 97 108 292
50% 97 108 321
40% 97 108 353
30% 98 110 347
Entity #9: Chains: I - DNA-directed RNA polymerase II, chain RPB9 protein, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 92 102 205
95% 92 102 289
90% 92 102 304
70% 92 102 323
50% 93 103 348
40% 93 103 375
30% 93 103 380
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.