Sequence Similarity Clusters for the Entities in PDB 1NIK

Entity #1 | Chains: A
RPB1 protein, length: 1733 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 102 114 213
95 % 102 114 302
90 % 102 114 317
70 % 102 114 356
50 % 103 124 368
40 % 103 124 398
30 % 103 124 399
Entity #10 | Chains: J
DNA-directed RNA polymerase II, chain RPB10 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 107 131 174
95 % 107 131 238
90 % 107 131 248
70 % 108 141 264
50 % 116 149 259
40 % 116 149 282
30 % 116 149 290
Entity #11 | Chains: K
DNA-directed RNA polymerase II, chain RPB11 protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 102 116 209
95 % 102 116 297
90 % 102 116 311
70 % 102 116 349
50 % 102 116 406
40 % 103 117 429
30 % 103 117 430
Entity #12 | Chains: L
DNA-directed RNA polymerase II, chain RPB12 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 105 127 180
95 % 105 127 248
90 % 105 127 256
70 % 105 127 291
50 % 105 127 326
40 % 105 127 357
30 % 105 127 361
Entity #2 | Chains: B
ORF YOR151c protein, length: 1224 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 101 115 210
95 % 102 116 291
90 % 102 116 304
70 % 102 116 344
50 % 103 126 358
40 % 111 134 326
30 % 111 137 329
Entity #3 | Chains: C
DNA-directed RNA polymerase II, chain RPB3 protein, length: 318 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 100 111 215
95 % 100 111 309
90 % 100 111 325
70 % 100 111 365
50 % 101 112 418
40 % 101 112 457
30 % 101 112 449
Entity #4 | Chains: D
DNA-directed RNA polymerase II, chain RPB4 protein, length: 161 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #5 | Chains: E
DNA-directed RNA polymerase II, chain RPB5 protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 108 132 171
95 % 108 132 233
90 % 108 132 244
70 % 108 132 280
50 % 109 133 305
40 % 109 142 305
30 % 109 142 317
Entity #6 | Chains: F
DNA-directed RNA polymerase I, II and III 23 kDa polypeptide protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 105 126 181
95 % 105 126 251
90 % 105 126 259
70 % 105 126 294
50 % 106 137 300
40 % 106 137 319
30 % 106 137 333
Entity #7 | Chains: G
DNA-directed RNA polymerase II, chain RPB7 protein, length: 170 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #8 | Chains: H
DNA-directed RNA polymerase subunit RPB8 protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 106 131 173
95 % 107 132 236
90 % 107 132 247
70 % 107 132 281
50 % 107 132 314
40 % 107 132 335
30 % 108 143 315
Entity #9 | Chains: I
DNA-directed RNA polymerase II, chain RPB9 protein, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 101 115 211
95 % 101 115 301
90 % 101 115 315
70 % 101 115 354
50 % 102 116 403
40 % 102 116 438
30 % 102 119 426

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.