Sequence Similarity Clusters for the Entities in PDB 1NIK

Entity #1 | Chains: A
RPB1 protein, length: 1733 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 103 115 229
95 % 103 115 321
90 % 103 115 339
70 % 105 120 356
50 % 106 132 368
40 % 106 132 393
30 % 106 132 397
Entity #10 | Chains: J
DNA-directed RNA polymerase II, chain RPB10 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 108 142 175
95 % 108 142 236
90 % 108 142 250
70 % 111 159 250
50 % 119 167 246
40 % 119 167 264
30 % 119 167 270
Entity #11 | Chains: K
DNA-directed RNA polymerase II, chain RPB11 protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 103 117 224
95 % 103 117 315
90 % 103 117 333
70 % 103 117 369
50 % 105 122 416
40 % 106 124 434
30 % 106 124 435
Entity #12 | Chains: L
DNA-directed RNA polymerase II, chain RPB12 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 106 138 183
95 % 106 138 244
90 % 106 138 259
70 % 106 138 289
50 % 108 143 313
40 % 108 143 328
30 % 108 143 336
Entity #2 | Chains: B
ORF YOR151c protein, length: 1224 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 102 116 226
95 % 103 117 313
90 % 103 117 329
70 % 106 124 339
50 % 106 134 357
40 % 114 142 324
30 % 114 145 330
Entity #3 | Chains: C
DNA-directed RNA polymerase II, chain RPB3 protein, length: 318 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 101 112 232
95 % 101 112 326
90 % 101 112 345
70 % 101 112 378
50 % 102 114 439
40 % 102 114 470
30 % 102 114 471
Entity #4 | Chains: D
DNA-directed RNA polymerase II, chain RPB4 protein, length: 161 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #5 | Chains: E
DNA-directed RNA polymerase II, chain RPB5 protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 109 143 172
95 % 109 143 233
90 % 109 143 248
70 % 111 148 271
50 % 112 150 291
40 % 112 160 284
30 % 112 160 293
Entity #6 | Chains: F
DNA-directed RNA polymerase I, II and III 23 kDa polypeptide protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 106 137 185
95 % 106 137 247
90 % 106 137 262
70 % 106 137 294
50 % 109 155 279
40 % 109 155 298
30 % 109 155 307
Entity #7 | Chains: G
DNA-directed RNA polymerase II, chain RPB7 protein, length: 170 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #8 | Chains: H
DNA-directed RNA polymerase subunit RPB8 protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 107 142 174
95 % 108 143 234
90 % 108 143 249
70 % 108 143 280
50 % 110 148 296
40 % 110 148 311
30 % 111 161 292
Entity #9 | Chains: I
DNA-directed RNA polymerase II, chain RPB9 protein, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 102 116 228
95 % 102 116 320
90 % 102 116 338
70 % 104 121 355
50 % 105 123 406
40 % 105 123 436
30 % 105 126 425

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.