Sequence Similarity Clusters for the Entities in PDB 1NIK

Entity #1 | Chains: A
RPB1 protein, length: 1733 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 102 114 206
95 % 102 114 291
90 % 102 114 304
70 % 102 114 329
50 % 103 124 328
40 % 103 124 354
30 % 103 124 361
Entity #10 | Chains: J
DNA-directed RNA polymerase II, chain RPB10 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 107 125 174
95 % 107 125 238
90 % 107 125 248
70 % 108 135 258
50 % 116 143 253
40 % 116 143 272
30 % 116 143 288
Entity #11 | Chains: K
DNA-directed RNA polymerase II, chain RPB11 protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 102 116 202
95 % 102 116 287
90 % 102 116 299
70 % 102 116 324
50 % 102 116 353
40 % 103 117 378
30 % 103 117 383
Entity #12 | Chains: L
DNA-directed RNA polymerase II, chain RPB12 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 105 121 181
95 % 105 121 251
90 % 105 121 259
70 % 105 121 297
50 % 105 121 324
40 % 105 121 348
30 % 105 121 354
Entity #2 | Chains: B
ORF YOR151c protein, length: 1224 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 101 115 203
95 % 102 116 284
90 % 102 116 295
70 % 102 116 321
50 % 103 126 322
40 % 111 134 310
30 % 111 137 311
Entity #3 | Chains: C
DNA-directed RNA polymerase II, chain RPB3 protein, length: 318 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 100 111 209
95 % 100 111 299
90 % 100 111 314
70 % 100 111 335
50 % 101 112 360
40 % 101 112 396
30 % 101 112 396
Entity #4 | Chains: D
DNA-directed RNA polymerase II, chain RPB4 protein, length: 161 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #5 | Chains: E
DNA-directed RNA polymerase II, chain RPB5 protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 108 126 169
95 % 108 126 234
90 % 108 126 244
70 % 108 126 274
50 % 109 127 307
40 % 109 136 303
30 % 109 136 319
Entity #6 | Chains: F
DNA-directed RNA polymerase I, II and III 23 kDa polypeptide protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 105 120 184
95 % 105 120 254
90 % 105 120 262
70 % 105 120 299
50 % 106 131 293
40 % 106 131 316
30 % 106 131 332
Entity #7 | Chains: G
DNA-directed RNA polymerase II, chain RPB7 protein, length: 170 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #8 | Chains: H
DNA-directed RNA polymerase subunit RPB8 protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 106 125 173
95 % 107 126 235
90 % 107 126 245
70 % 107 126 277
50 % 107 126 314
40 % 107 126 336
30 % 108 137 314
Entity #9 | Chains: I
DNA-directed RNA polymerase II, chain RPB9 protein, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 101 115 205
95 % 101 115 290
90 % 101 115 303
70 % 101 115 328
50 % 102 116 350
40 % 102 116 382
30 % 102 119 378

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.