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An Information Portal to 111749 Biological Macromolecular Structures

Wild Type RNA Polymerase II
Sequence Clustering and Redundancy Reduction Results
1NIK
Sequence Clusters for the Sequence Entities in PDB 1NIK
Entity #1: Chains: A - RPB1 protein, length: 1733 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 100 108 198
95% 100 108 274
90% 100 108 288
70% 100 108 310
50% 101 109 330
40% 101 109 360
30% 101 109 366
Entity #10: Chains: J - DNA-directed RNA polymerase II, chain RPB10 protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 104 114 184
95% 104 114 252
90% 104 114 262
70% 105 115 273
50% 113 123 270
40% 113 123 296
30% 113 123 311
Entity #11: Chains: K - DNA-directed RNA polymerase II, chain RPB11 protein, length: 120 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 100 110 194
95% 100 110 271
90% 100 110 284
70% 100 110 305
50% 100 110 334
40% 101 111 354
30% 101 111 363
Entity #12: Chains: L - DNA-directed RNA polymerase II, chain RPB12 protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 104 113 187
95% 104 113 254
90% 104 113 265
70% 104 113 291
50% 104 113 318
40% 104 113 350
30% 104 113 357
Entity #2: Chains: B - ORF YOR151c protein, length: 1224 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 99 109 195
95% 100 110 267
90% 100 110 280
70% 100 110 302
50% 101 111 321
40% 109 119 308
30% 109 119 319
Entity #3: Chains: C - DNA-directed RNA polymerase II, chain RPB3 protein, length: 318 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 100 108 200
95% 100 108 277
90% 100 108 291
70% 100 108 311
50% 101 109 331
40% 101 109 364
30% 101 109 368
Entity #4: Chains: D - DNA-directed RNA polymerase II, chain RPB4 protein, length: 161 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #5: Chains: E - DNA-directed RNA polymerase II, chain RPB5 protein, length: 215 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 105 115 171
95% 105 115 240
90% 105 115 250
70% 105 115 279
50% 106 116 305
40% 106 116 335
30% 106 116 342
Entity #6: Chains: F - DNA-directed RNA polymerase I, II and III 23 kDa polypeptide protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 104 112 188
95% 104 112 256
90% 104 112 268
70% 104 112 294
50% 105 114 313
40% 105 114 341
30% 105 114 351
Entity #7: Chains: G - DNA-directed RNA polymerase II, chain RPB7 protein, length: 170 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #8: Chains: H - DNA-directed RNA polymerase subunit RPB8 protein, length: 146 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 103 114 180
95% 104 115 242
90% 104 115 252
70% 104 115 282
50% 104 115 314
40% 104 115 342
30% 105 117 336
Entity #9: Chains: I - DNA-directed RNA polymerase II, chain RPB9 protein, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 99 109 196
95% 99 109 273
90% 99 109 287
70% 99 109 309
50% 100 110 329
40% 100 110 359
30% 100 110 365
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.