Sequence Similarity Clusters for the Entities in PDB 1NIH

Entity #1 | Chains: A,C
HEMOGLOBIN (NICKELOUS DEOXY) (ALPHA CHAIN) protein, length: 141 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 209 254 12
95 % 219 265 16 Flexibility: Low
Max RMSD: 3.8, Avg RMSD: 0.7
PDBFlex
90 % 219 265 17
70 % 260 332 17
50 % 613 754 4
40 % 618 759 7
30 % 1093 1294 6
Entity #2 | Chains: B,D
HEMOGLOBIN (FERROUS CARBONMONOXY) (BETA CHAIN) protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 182 214 43
95 % 214 250 20 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.6
PDBFlex
90 % 218 255 21
70 % 278 346 14
50 % 614 754 4
40 % 619 759 7
30 % 1094 1294 6

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures