Sequence Similarity Clusters for the Entities in PDB 1NIH

Entity #1 | Chains: A,C
HEMOGLOBIN (NICKELOUS DEOXY) (ALPHA CHAIN) protein, length: 141 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 174 214 23
95 % 203 245 19 Flexibility: Low
Max RMSD: 3.8, Avg RMSD: 0.7
PDBFlex
90 % 204 246 21
70 % 255 327 15
50 % 603 744 4
40 % 608 749 8
30 % 1042 1201 8
Entity #2 | Chains: B,D
HEMOGLOBIN (FERROUS CARBONMONOXY) (BETA CHAIN) protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 133 164 51
95 % 209 245 18 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.6
PDBFlex
90 % 213 250 19
70 % 273 341 13
50 % 604 744 4
40 % 609 749 8
30 % 1043 1201 8

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures