Sequence Similarity Clusters for the Entities in PDB 1NI4

Entity #1 | Chains: A,C
Pyruvate dehydrogenase E1 component: Alpha subunit protein, length: 365 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 35225
95 % 3 8 1695 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 0.6
PDBFlex
90 % 3 8 1735
70 % 3 8 1750
50 % 3 8 1791
40 % 3 8 1799
30 % 3 8 1751
Entity #2 | Chains: B,D
Pyruvate dehydrogenase E1 component: Beta subunit protein, length: 341 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 7 1259
95 % 3 7 1698 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 3 7 1738
70 % 3 7 1753
50 % 3 7 1798
40 % 3 7 1806
30 % 27 42 610

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures