Sequence Similarity Clusters for the Entities in PDB 1NI4

Entity #1 | Chains: A,C
Pyruvate dehydrogenase E1 component: Alpha subunit protein, length: 365 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 34456
95 % 3 8 1650 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 0.6
PDBFlex
90 % 3 8 1684
70 % 3 8 1704
50 % 3 8 1742
40 % 3 8 1747
30 % 3 8 1701
Entity #2 | Chains: B,D
Pyruvate dehydrogenase E1 component: Beta subunit protein, length: 341 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 7 1228
95 % 3 7 1652 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 3 7 1686
70 % 3 7 1707
50 % 3 7 1748
40 % 3 7 1753
30 % 27 42 603

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.