Sequence Similarity Clusters for the Entities in PDB 1NI4

Entity #1 | Chains: A,C
Pyruvate dehydrogenase E1 component: Alpha subunit protein, length: 365 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 18223
95 % 3 8 1788 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 0.7
PDBFlex
90 % 3 8 1829
70 % 3 8 1842
50 % 3 8 1881
40 % 3 8 1865
30 % 3 8 1797
Entity #2 | Chains: B,D
Pyruvate dehydrogenase E1 component: Beta subunit protein, length: 341 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 7 1492
95 % 3 7 1763 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 3 7 1807
70 % 3 7 1813
50 % 3 7 1843
40 % 3 7 1829
30 % 27 42 640

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures