Sequence Similarity Clusters for the Entities in PDB 1NI4

Entity #1 | Chains: A,C
Pyruvate dehydrogenase E1 component: Alpha subunit protein, length: 365 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 35654
95 % 3 8 1733 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 0.6
PDBFlex
90 % 3 8 1772
70 % 3 8 1780
50 % 3 8 1816
40 % 3 8 1817
30 % 3 8 1768
Entity #2 | Chains: B,D
Pyruvate dehydrogenase E1 component: Beta subunit protein, length: 341 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 7 1278
95 % 3 7 1736 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 3 7 1775
70 % 3 7 1783
50 % 3 7 1822
40 % 3 7 1823
30 % 27 42 618

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures