Sequence Similarity Clusters for the Entities in PDB 1NI1

Entity #1 | Chains: A
Protein farnesyltransferase alpha subunit protein, length: 315 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 7 11453
95 % 3 10 7351 Flexibility: Low
Max RMSD: 0.8, Avg RMSD: 0.5
PDBFlex
90 % 3 10 6955
70 % 3 10 6756
50 % 3 10 6773
40 % 3 10 6278
30 % 17 25 2337
Entity #2 | Chains: B
Protein farnesyltransferase beta subunit protein, length: 402 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 31 41 1146
95 % 44 56 963 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 0.7
PDBFlex
90 % 44 56 990
70 % 44 56 1026
50 % 44 56 1073
40 % 44 56 1083
30 % 44 56 1082

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures