Sequence Similarity Clusters for the Entities in PDB 1NI1

Entity #1 | Chains: A
Protein farnesyltransferase alpha subunit protein, length: 315 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 7 9984
95 % 3 10 6651 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.5
PDBFlex
90 % 3 10 6639
70 % 3 10 6466
50 % 3 10 6013
40 % 3 10 5619
30 % 17 25 2193
Entity #2 | Chains: B
Protein farnesyltransferase beta subunit protein, length: 402 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 31 41 917
95 % 44 56 878 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 0.7
PDBFlex
90 % 44 56 912
70 % 44 56 944
50 % 44 56 993
40 % 44 56 1014
30 % 44 56 990

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.