Sequence Similarity Clusters for the Entities in PDB 1NHK

Entity #1 | Chains: L,R
NUCLEOSIDE DIPHOSPHATE KINASE protein, length: 144 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 12667
95 % 1 3 12104 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.3
PDBFlex
90 % 1 3 11923
70 % 4 20 501
50 % 27 129 73
40 % 33 158 39
30 % 33 158 57

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures