Sequence Similarity Clusters for the Entities in PDB 1NHC

Entity #1 | Chains: A,B,C,D,E,F
Polygalacturonase I protein, length: 336 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 12488
95 % 1 1 12174 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.2
PDBFlex
90 % 1 1 12009
70 % 1 1 11345
50 % 2 5 3515
40 % 5 9 2812
30 % 5 10 2538

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures