Sequence Similarity Clusters for the Entities in PDB 1NH2

Entity #1 | Chains: E
5'-D(*TP*GP*TP*AP*(5IU)P*GP*TP*AP*TP*AP*(5IU)P*AP*AP*AP*AP*C)-3' dna, length: 16 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: F
5'-D(*GP*TP*TP*TP*TP*AP*TP*AP*TP*AP*CP*AP*TP*AP*CP*A)-3' dna, length: 16 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A
Transcription initiation factor TFIID protein, length: 180 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 9 4046
95 % 2 9 4829 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 0.8
PDBFlex
90 % 2 9 4850
70 % 8 33 957
50 % 10 37 897
40 % 10 41 841
30 % 10 42 781
Entity #4 | Chains: B
Transcription initiation factor IIA large chain protein, length: 53 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 48889
95 % 1 2 36524 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.4
PDBFlex
90 % 1 2 34884
70 % 1 2 31027
50 % 1 2 26534
40 % 1 2 23431
30 % 1 2 19898
Entity #5 | Chains: C
Transcription initiation factor IIA large chain protein, length: 79 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 48059
95 % 1 2 35902 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.3
PDBFlex
90 % 1 2 34301
70 % 1 2 30510
50 % 1 2 26090
40 % 1 3 16766
30 % 1 3 14361
Entity #6 | Chains: D
Transcription initiation factor IIA small chain protein, length: 121 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 7 10751
95 % 1 7 10754 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.5
PDBFlex
90 % 1 7 10607
70 % 1 7 10070
50 % 1 7 9118
40 % 1 7 8345
30 % 1 17 3334

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.