Sequence Similarity Clusters for the Entities in PDB 1NH2

Entity #1 | Chains: E
5'-D(*TP*GP*TP*AP*(5IU)P*GP*TP*AP*TP*AP*(5IU)P*AP*AP*AP*AP*C)-3' dna, length: 16 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: F
5'-D(*GP*TP*TP*TP*TP*AP*TP*AP*TP*AP*CP*AP*TP*AP*CP*A)-3' dna, length: 16 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A
Transcription initiation factor TFIID protein, length: 180 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 9 3777
95 % 2 9 4535
90 % 2 9 4549
70 % 8 32 953
50 % 8 32 987
40 % 8 36 915
30 % 10 41 747
Entity #4 | Chains: B
Transcription initiation factor IIA large chain protein, length: 53 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 46492
95 % 1 2 34713
90 % 1 2 33209
70 % 1 2 29661
50 % 1 2 25450
40 % 1 2 22485
30 % 1 2 19087
Entity #5 | Chains: C
Transcription initiation factor IIA large chain protein, length: 79 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 45708
95 % 1 2 34131
90 % 1 2 32657
70 % 1 2 29166
50 % 1 2 25021
40 % 1 3 16047
30 % 1 3 13748
Entity #6 | Chains: D
Transcription initiation factor IIA small chain protein, length: 121 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 7 10143
95 % 1 7 10147
90 % 1 7 10014
70 % 1 7 9506
50 % 1 7 8643
40 % 1 7 7914
30 % 1 17 3190

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.