Sequence Similarity Clusters for the Entities in PDB 1NH2

Entity #1 | Chains: E
5'-D(*TP*GP*TP*AP*(5IU)P*GP*TP*AP*TP*AP*(5IU)P*AP*AP*AP*AP*C)-3' dna, length: 16 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: F
5'-D(*GP*TP*TP*TP*TP*AP*TP*AP*TP*AP*CP*AP*TP*AP*CP*A)-3' dna, length: 16 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A
Transcription initiation factor TFIID protein, length: 180 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 9 4155
95 % 2 9 4957 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 0.8
PDBFlex
90 % 2 9 4978
70 % 8 33 979
50 % 10 37 914
40 % 10 41 854
30 % 10 42 797
Entity #4 | Chains: B
Transcription initiation factor IIA large chain protein, length: 53 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 49884
95 % 1 2 37225 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.4
PDBFlex
90 % 1 2 35521
70 % 1 2 31557
50 % 1 2 26959
40 % 1 2 23801
30 % 1 2 20198
Entity #5 | Chains: C
Transcription initiation factor IIA large chain protein, length: 79 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 49047
95 % 1 2 36596 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.3
PDBFlex
90 % 1 2 34931
70 % 1 2 31035
50 % 1 2 26512
40 % 1 3 17051
30 % 1 3 14602
Entity #6 | Chains: D
Transcription initiation factor IIA small chain protein, length: 121 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 7 11001
95 % 1 7 10981 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.5
PDBFlex
90 % 1 7 10831
70 % 1 7 10284
50 % 1 7 9309
40 % 1 7 8518
30 % 1 17 3405

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures