Sequence Similarity Clusters for the Entities in PDB 1NH2

Entity #1 | Chains: E
5'-D(*TP*GP*TP*AP*(5IU)P*GP*TP*AP*TP*AP*(5IU)P*AP*AP*AP*AP*C)-3' dna, length: 16 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: F
5'-D(*GP*TP*TP*TP*TP*AP*TP*AP*TP*AP*CP*AP*TP*AP*CP*A)-3' dna, length: 16 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A
Transcription initiation factor TFIID protein, length: 180 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 9 4223
95 % 2 9 5026 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 0.8
PDBFlex
90 % 2 9 5052
70 % 8 33 991
50 % 10 37 919
40 % 10 41 862
30 % 10 42 809
Entity #4 | Chains: B
Transcription initiation factor IIA large chain protein, length: 53 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 50456
95 % 1 2 37641 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.4
PDBFlex
90 % 1 2 35902
70 % 1 2 31884
50 % 1 2 27226
40 % 1 2 24041
30 % 1 2 20404
Entity #5 | Chains: C
Transcription initiation factor IIA large chain protein, length: 79 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 49617
95 % 1 2 37012 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.3
PDBFlex
90 % 1 2 35314
70 % 1 2 31364
50 % 1 2 26780
40 % 1 3 17221
30 % 1 3 14750
Entity #6 | Chains: D
Transcription initiation factor IIA small chain protein, length: 121 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 7 11175
95 % 1 7 11149 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.5
PDBFlex
90 % 1 7 10998
70 % 1 7 10435
50 % 1 7 9440
40 % 1 7 8631
30 % 1 17 3444

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures