Sequence Similarity Clusters for the Entities in PDB 1NH2

Entity #1 | Chains: E
5'-D(*TP*GP*TP*AP*(5IU)P*GP*TP*AP*TP*AP*(5IU)P*AP*AP*AP*AP*C)-3' dna, length: 16 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: F
5'-D(*GP*TP*TP*TP*TP*AP*TP*AP*TP*AP*CP*AP*TP*AP*CP*A)-3' dna, length: 16 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A
Transcription initiation factor TFIID protein, length: 180 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 9 3719
95 % 2 9 4454
90 % 2 9 4468
70 % 8 32 921
50 % 8 32 965
40 % 8 36 888
30 % 10 41 733
Entity #4 | Chains: B
Transcription initiation factor IIA large chain protein, length: 53 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 45816
95 % 1 2 34227
90 % 1 2 32763
70 % 1 2 29283
50 % 1 2 25127
40 % 1 2 22197
30 % 1 2 18847
Entity #5 | Chains: C
Transcription initiation factor IIA large chain protein, length: 79 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 45046
95 % 1 2 33647
90 % 1 2 32212
70 % 1 2 28789
50 % 1 2 24700
40 % 1 3 15846
30 % 1 3 13584
Entity #6 | Chains: D
Transcription initiation factor IIA small chain protein, length: 121 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 7 9987
95 % 1 7 9983
90 % 1 7 9860
70 % 1 7 9355
50 % 1 7 8513
40 % 1 7 7798
30 % 1 17 3146

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.