Sequence Similarity Clusters for the Entities in PDB 1NGY

Entity #1 | Chains: A
Mature Metal Chelatase Catalytic Antibody, Light chain protein, length: 213 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 6 8126
95 % 4 6 8169 Flexibility: Low
Max RMSD: 5.6, Avg RMSD: 2.3
PDBFlex
90 % 344 793 2
70 % 1122 2593 1
50 % 2300 5263 1
40 % 2637 5933 1
30 % 3199 7388 1
Entity #2 | Chains: B
Mature Metal Chelatase Catalytic Antibody, Heavy chain protein, length: 216 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 51838
95 % 4 6 8119 Flexibility: Medium
Max RMSD: 6.9, Avg RMSD: 3.6
PDBFlex
90 % 6 8 6906
70 % 1112 2550 2
50 % 2301 5263 1
40 % 2638 5933 1
30 % 3200 7388 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1C5C 2 H CHIMERIC DECARBOXYLASE ANTIBODY 21D8 THE CONSTANT DOMAIN (RESIDUES 109-230) IS FROM HUMAN SOURCE, AND THE VARIABLE DOMAIN (RESIDUES 1-108) IS FROM MURINE SOURCE FAB 10090
2 1NGZ 2 B Germline Metal Chelatase Catalytic Antibody, Heavy chain germline Fab fragment 10090
3 1N7M 2 L Germline Metal Chelatase Catalytic Antibody, chain L 10090
4 1NGX 2 B, H Germline Metal Chelatase Catalytic Antibody, Heavy chain germline Fab fragment 10090
5 1C5B 2 H CHIMERIC DECARBOXYLASE ANTIBODY 21D8 THE CONSTANT DOMAIN (RESIDUES 109-230) IS FROM HUMAN SOURCE, AND THE VARIABLE DOMAIN (RESIDUES 1-108) IS FROM MURINE SOURCE FAB 10090
6 1NGY 2 B Mature Metal Chelatase Catalytic Antibody, Heavy chain Fab fragment 10090
7 3FCT 2 B, D PROTEIN (METAL CHELATASE CATALYTIC ANTIBODY) CHIMERIC FAB FRAGMENT FAB FRAGMENT 9606
8 1NGW 2 B, H Mature Metal Chelatase Catalytic Antibody, Heavy chain germline Fab fragment 10090