Sequence Similarity Clusters for the Entities in PDB 1NGY

Entity #1 | Chains: A
Mature Metal Chelatase Catalytic Antibody, Light chain protein, length: 213 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 6 8622
95 % 4 6 8661 Flexibility: Low
Max RMSD: 5.6, Avg RMSD: 2.6
PDBFlex
90 % 377 865 2
70 % 1184 2765 1
50 % 2437 5625 1
40 % 2792 6382 1
30 % 3381 7934 1
Entity #2 | Chains: B
Mature Metal Chelatase Catalytic Antibody, Heavy chain protein, length: 216 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 54444
95 % 4 6 9172 Flexibility: Medium
Max RMSD: 6.9, Avg RMSD: 3.6
PDBFlex
90 % 6 8 7309
70 % 1179 2728 2
50 % 2438 5625 1
40 % 2793 6382 1
30 % 3382 7934 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1NGZ 1 A Germline Metal Chelatase Catalytic Antibody, Light chain germline Fab fragment 10090
2 1N7M 1 H Germline Metal Chelatase Catalytic Antibody, chain H 10090
3 1NGX 1 A, L Germline Metal Chelatase Catalytic Antibody, Light chain germline Fab fragment 10090
4 1NGY 1 A Mature Metal Chelatase Catalytic Antibody, Light chain Fab fragment 10090
5 3FCT 1 A, C PROTEIN (METAL CHELATASE CATALYTIC ANTIBODY) CHIMERIC FAB FRAGMENT FAB FRAGMENT 9606
6 1NGW 1 A, L Mature Metal Chelatase Catalytic Antibody, Light chain germline Fab fragment 10090