Sequence Similarity Clusters for the Entities in PDB 1NGY

Entity #1 | Chains: A
Mature Metal Chelatase Catalytic Antibody, Light chain protein, length: 213 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 6 8330
95 % 4 6 8396 Flexibility: Low
Max RMSD: 5.6, Avg RMSD: 2.3
PDBFlex
90 % 363 832 2
70 % 1156 2670 1
50 % 2368 5421 1
40 % 2711 6121 1
30 % 3275 7588 1
Entity #2 | Chains: B
Mature Metal Chelatase Catalytic Antibody, Heavy chain protein, length: 216 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 52977
95 % 4 6 8336 Flexibility: Medium
Max RMSD: 6.9, Avg RMSD: 3.6
PDBFlex
90 % 6 8 7081
70 % 1146 2629 2
50 % 2369 5421 1
40 % 2712 6121 1
30 % 3276 7588 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1NGZ 1 A Germline Metal Chelatase Catalytic Antibody, Light chain germline Fab fragment 10090
2 1N7M 1 H Germline Metal Chelatase Catalytic Antibody, chain H 10090
3 1NGX 1 A, L Germline Metal Chelatase Catalytic Antibody, Light chain germline Fab fragment 10090
4 1NGY 1 A Mature Metal Chelatase Catalytic Antibody, Light chain Fab fragment 10090
5 3FCT 1 A, C PROTEIN (METAL CHELATASE CATALYTIC ANTIBODY) CHIMERIC FAB FRAGMENT FAB FRAGMENT 9606
6 1NGW 1 A, L Mature Metal Chelatase Catalytic Antibody, Light chain germline Fab fragment 10090