Sequence Similarity Clusters for the Entities in PDB 1NGX

Entity #1 | Chains: A,L
Germline Metal Chelatase Catalytic Antibody, Light chain protein, length: 213 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 40053
95 % 3 6 7634 Flexibility: Low
Max RMSD: 5.6, Avg RMSD: 2.3
PDBFlex
90 % 105 693 3
70 % 359 2264 1
50 % 734 4587 1
40 % 734 4587 1
30 % 793 5392 1
Entity #2 | Chains: B,H
Germline Metal Chelatase Catalytic Antibody, Heavy chain protein, length: 216 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 39729
95 % 3 6 7612 Flexibility: Medium
Max RMSD: 6.4, Avg RMSD: 3.7
PDBFlex
90 % 3 6 7571
70 % 359 2222 2
50 % 735 4587 1
40 % 735 4587 1
30 % 794 5392 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.