Sequence Similarity Clusters for the Entities in PDB 1NGX

Entity #1 | Chains: A,L
Germline Metal Chelatase Catalytic Antibody, Light chain protein, length: 213 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 6 7924
95 % 3 6 7995 Flexibility: Low
Max RMSD: 4.3, Avg RMSD: 1.8
PDBFlex
90 % 140 761 2
70 % 415 2516 1
50 % 848 5101 1
40 % 1033 5750 1
30 % 1263 7168 1
Entity #2 | Chains: B,H
Germline Metal Chelatase Catalytic Antibody, Heavy chain protein, length: 216 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 40469
95 % 3 6 7945 Flexibility: Medium
Max RMSD: 6.9, Avg RMSD: 3.3
PDBFlex
90 % 4 8 6765
70 % 415 2475 2
50 % 849 5101 1
40 % 1034 5750 1
30 % 1264 7168 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures