Sequence Similarity Clusters for the Entities in PDB 1NGX

Entity #1 | Chains: A,L
Germline Metal Chelatase Catalytic Antibody, Light chain protein, length: 213 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 41205
95 % 3 6 7858 Flexibility: Low
Max RMSD: 4.3, Avg RMSD: 1.8
PDBFlex
90 % 113 729 3
70 % 377 2362 1
50 % 771 4781 1
40 % 771 4781 1
30 % 836 5635 1
Entity #2 | Chains: B,H
Germline Metal Chelatase Catalytic Antibody, Heavy chain protein, length: 216 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 40866
95 % 3 6 7837 Flexibility: Medium
Max RMSD: 6.9, Avg RMSD: 3.3
PDBFlex
90 % 3 6 7785
70 % 376 2311 2
50 % 772 4781 1
40 % 772 4781 1
30 % 837 5635 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures