Sequence Similarity Clusters for the Entities in PDB 1NGQ

Entity #1 | Chains: L
N1G9 (IGG1-LAMBDA) protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 8 7807
95 % 14 39 540 Flexibility: Low
Max RMSD: 8.9, Avg RMSD: 2.4
PDBFlex
90 % 17 45 490
70 % 1106 2637 1
50 % 2277 5362 1
40 % 2612 6051 1
30 % 3170 7514 1
Entity #2 | Chains: H
N1G9 (IGG1-LAMBDA) protein, length: 222 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 47551
95 % 1 8 10587 Flexibility: Low
Max RMSD: 3.6, Avg RMSD: 2.2
PDBFlex
90 % 11 39 775
70 % 1102 2600 2
50 % 2278 5362 1
40 % 2613 6051 1
30 % 3171 7514 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 5EPM 1 A, E Antibody Fab fragment heavy chain 10090
2 4OKV 1 A, C heavy chain of 8H7 mAb 10090
3 1E6O 1 H IMMUNOGLOBULIN HEAVY CHAIN OBTAINED BY PEPSIN CLEAVAGE (FAB') HEAVY CHAIN 1-219 10090
4 4H88 2 H POM1 FAB CHAIN H 10090
5 4MA7 2 H POM1 heavy chain Fab 10090
6 5H2B 1 A G196 antibody Heavy chain 10090
7 4AMK 1 H FAB13G10, HEAVY CHAIN 10090
8 4MA8 2 H POM1 heavy chain Fab 10090
9 4YX2 2 H POM1 FAB HEAVY CHAIN 10090
10 1IQW 2 H ANTIBODY M-HFE7A, HEAVY CHAIN FAB FRAGMENT 10090
11 1NGQ 2 H N1G9 (IGG1-LAMBDA) FAB FRAGMENT 10090
12 1NGP 2 H N1G9 (IGG1-LAMBDA) FAB FRAGMENT 10090
13 2UYL 2 B, N, W, Y MONOCLONAL ANTIBODY F-22-30 10090
14 2Y07 1 H ANTI-NP MURINE GERMLINE MONOCLONAL ANTIBODY BBE6.12H3, HEAVY CHAIN 10090
15 2XZQ 1 H ANTI-NP MURINE GERMLINE MONOCLONAL ANTIBODY BBE6.12H3, HEAVY CHAIN 10090
16 2Y06 1 H ANTI-NP MURINE GERMLINE MONOCLONAL ANTIBODY BBE6.12H3, HEAVY CHAIN 10090
17 4QT5 2 B, H 3BD10 mouse monoclonal antibody, heavy chain 10090
18 4DGI 2 H POM1 Fab Heavy chain 10090
19 1FBI 2 H, Q IGG1 F9.13.7 FAB (HEAVY CHAIN) 10090
20 2Y36 1 H ANTI-NP MURINE GERMLINE MONOCLONAL ANTIBODY BBE6.12H3 ANTIGEN-BINDING FRAGMENT, RESIDUE 1-220 10090
21 4RDQ 3 G, I, K, M, O Fab antibody fragment, heavy chain 10090
22 4RGN 4 D, F 6D3 heavy chain Fab 10090
23 4YXH 2 H POM1 FAB HEAVY CHAIN 10090
24 5D8J 2 H HA3 Fab Heavy Chain 10090
25 3V4V 3 H, M MONOCLONAL ANTIBODY Act-1 HEAVY CHAIN 10090
26 1E6J 1 H IMMUNOGLOBULIN OBTAINED BY PAPAIN CLEAVAGE (FAB) HEAVY CHAIN 1-219 10090
27 4YXL 2 H POM1 FAB HEAVY CHAIN 10090
28 4AT6 1 A, C, E, G, H, J, M, O FAB 14H7 HEAVY CHAIN 10090
29 5T5F 2 H Monoclonal antibody Jar5 heavy chain 10090
30 5T5N 3 G, I, K, M, O Fab antibody fragment, heavy chain (10D10) 10090
31 4A6Y 2 B ANTIBODY BBE6.12H3 HEAVY CHAIN ANTIGEN BINDING 10090
32 4A6Y 3 H ANTIBODY BBE6.12H3 HEAVY CHAIN ANTIGEN BINDING 10090
33 3V4P 3 H, M MONOCLONAL ANTIBODY Act-1 HEAVY CHAIN 10090
34 2I9L 2 B, D, F, H Antibody 7D11 heavy chain 10090
35 5W0K 3 E, H CL40 IgG heavy chain 10090
36 4YXK 2 H POM1 FAB HEAVY CHAIN 10090
37 1AFV 3 H, K ANTIBODY FAB25.3 FRAGMENT (HEAVY CHAIN) LIGHT CHAIN RESIDUES 1 - 217, HEAVY CHAIN RESIDUES 1 - 220 10090
38 1Z3G 2 H, I 2A8 Fab Heavy Chain Fab Heavy Chain 10090
39 3S62 2 H Fab fragment of antibody 2A8, Heavy chain 10090