Sequence Similarity Clusters for the Entities in PDB 1NGQ

Entity #1 | Chains: L
N1G9 (IGG1-LAMBDA) protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 8 7079
95 % 14 39 510 Flexibility: Low
Max RMSD: 8.9, Avg RMSD: 2.4
PDBFlex
90 % 17 45 469
70 % 1072 2553 1
50 % 2197 5180 1
40 % 2524 5834 1
30 % 3073 7269 1
Entity #2 | Chains: H
N1G9 (IGG1-LAMBDA) protein, length: 222 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 46236
95 % 1 8 10235 Flexibility: Low
Max RMSD: 3.6, Avg RMSD: 2.2
PDBFlex
90 % 11 37 937
70 % 1063 2511 2
50 % 2198 5180 1
40 % 2525 5834 1
30 % 3074 7269 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 2ZPK 1 L, M IgG1-lambda P20.1 Fab (light chain) 10090
2 1MFB 1 L IGG1-LAMBDA SE155-4 FAB (LIGHT CHAIN) 10090
3 1MFE 1 L IGG1-LAMBDA SE155-4 FAB (LIGHT CHAIN) 10090
4 1MFC 1 L IGG1-LAMBDA SE155-4 FAB (LIGHT CHAIN) 10090
5 1SM3 1 L SM3 ANTIBODY FAB FRAGMENT 10090
6 1MFD 1 L IGG1-LAMBDA SE155-4 FAB (LIGHT CHAIN) 10090
7 1NC2 1 A, C MONOCLONAL ANTIBODY 2D12.5, LAMBDA LIGHT CHAIN Fab 10090
8 1IND 1 L IGG1-LAMBDA CHA255 FAB (LIGHT CHAIN) 10090
9 4AMK 2 L FAB13G10, LIGHT CHAIN 10090
10 1F4X 1 L ANTIBODY S-20-4, FAB FRAGMENT, LIGHT CHAIN 10090
11 1GIG 1 L IGG1-KAPPA HC19 FAB (LIGHT CHAIN) 10090
12 1F4W 1 L ANTIBODY S-20-4, FAB FRAGMENT, LIGHT CHAIN 10090
13 1NC4 1 A, C MONOCLONAL ANTIBODY 2D12.5, LAMBDA LIGHT CHAIN Fab 10090
14 1NGQ 1 L N1G9 (IGG1-LAMBDA) FAB FRAGMENT 10090
15 1NGP 1 L N1G9 (IGG1-LAMBDA) FAB FRAGMENT 10090
16 2Y07 2 L ANTI-NP MURINE GERMLINE MONOCLONAL ANTIBODY BBE6.12H3, LIGHT CHAIN 10090
17 1INE 1 L IGG1-LAMBDA CHA255 FAB (LIGHT CHAIN) 10090
18 2XZQ 2 L ANTI-NP MURINE GERMLINE MONOCLONAL ANTIBODY BBE6.12H3, LIGHT CHAIN 10090
19 1ETZ 1 A, L FAB NC10.14 - LIGHT CHAIN 10090
20 2Y06 2 L ANTI-NP MURINE GERMLINE MONOCLONAL ANTIBODY BBE6.12H3, LIGHT CHAIN 10090
21 3KS0 1 J, L heme domain of flavocytochrome b2 10090
22 2OP4 1 L Murine Antibody Fab RS2-1G9 Lambda Light Chain 10090
23 1YUH 1 A, L 88C6/12 FAB (LIGHT CHAIN) 10090
24 2Y36 2 L ANTI-NP MURINE GERMLINE MONOCLONAL ANTIBODY BBE6.12H3 ANTIGEN-BINDING FRAGMENT, RESIDUES 1-211 10090
25 1F4Y 1 L ANTIBODY S-20-4, FAB FRAGMENT, LIGHT CHAIN 10090
26 2VIS 1 A IMMUNOGLOBULIN (IGG1, LAMBDA) FAB FRAGMENT 10090
27 2VIT 1 A IMMUNOGLOBULIN (IGG1, LAMBDA) FAB FRAGMENT 10090
28 4AT6 2 B, D, F, I, K, L, N, P FAB 14H7 LIGHT CHAIN 10090
29 2VIR 1 A IMMUNOGLOBULIN (IGG1, LAMBDA) FAB FRAGMENT 10090
30 4A6Y 1 A ANTIBODY BBE6.12H3 LIGHT CHAIN ANTIGEN BINDING 10090
31 4A6Y 4 L ANTIBODY BBE6.12H3 LIGHT CHAIN ANTIGEN BINDING 10090
32 2NTF 1 A, L Murine Antibody Fab RS2-1G9 Lambda Light Chain 10090
33 4TNW 3 K, L, M, N, O, Z, f, g, h, i Mouse monoclonal Fab fragment, light chain 10090
34 3RHW 3 K, L, M, N, O Mouse monoclonal Fab fragment, light chain 10090
35 3RI5 3 K, L, M, N, O Mouse monoclonal Fab fragment, light chain 10090
36 3RIF 3 K, L, M, N, O Mouse monoclonal Fab fragment, light chain 10090
37 4TNV 3 K, L, M, N, O, Z, f, g, h, i Mouse monoclonal Fab fragment, light chain 10090
38 3RIA 3 K, L, M, N, O Mouse monoclonal Fab fragment, light chain 10090
39 5ANY 4 M, N, O, P FAB LIGHT CHAIN 10090