Sequence Similarity Clusters for the Entities in PDB 1NGK

Entity #1 | Chains: A,B,C,D,E,F,G,H,I,J,K,L
Hemoglobin-like protein HbO protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 5425
95 % 2 2 2608 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 0.6
PDBFlex
90 % 2 2 2662
70 % 2 2 2650
50 % 3 4 2240
40 % 6 10 1523
30 % 6 10 1491

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures