Sequence Similarity Clusters for the Entities in PDB 1NFY

Entity #1 | Chains: A
Coagulation factor XA, heavy chain protein, length: 254 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 56 119 215
95 % 68 134 257
90 % 68 134 271
70 % 68 135 307
50 % 560 683 14
40 % 1219 1698 4
30 % 1312 1848 6
Entity #2 | Chains: B
Coagulation factor XA, light chain protein, length: 134 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 27 39 1022
95 % 28 40 1353 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.3
PDBFlex
90 % 28 40 1379
70 % 28 40 1398
50 % 38 74 760
40 % 38 74 796
30 % 38 74 788

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures