Sequence Similarity Clusters for the Entities in PDB 1NFY

Entity #1 | Chains: A
Coagulation factor XA, heavy chain protein, length: 254 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 56 119 208
95 % 68 134 243 Flexibility: No
Max RMSD: 2.3, Avg RMSD: 0.5
PDBFlex
90 % 68 134 257
70 % 68 135 285
50 % 554 677 13
40 % 1205 1674 4
30 % 1298 1822 6
Entity #2 | Chains: B
Coagulation factor XA, light chain protein, length: 134 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 27 39 968
95 % 28 40 1306 Flexibility: No
Max RMSD: 3.8, Avg RMSD: 0.4
PDBFlex
90 % 28 40 1330
70 % 28 40 1350
50 % 38 74 713
40 % 38 74 748
30 % 38 74 737

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.