Sequence Similarity Clusters for the Entities in PDB 1NFX

Entity #1 | Chains: A
COAGULATION FACTOR XA, heavy chain protein, length: 254 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 85 136 209
95 % 85 136 268 Flexibility: No
Max RMSD: 2.3, Avg RMSD: 0.5
PDBFlex
90 % 85 136 279
70 % 85 137 320
50 % 604 710 14
40 % 1435 1885 4
30 % 1443 1899 7
Entity #2 | Chains: B
Coagulation factor XA, light chain protein, length: 134 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 34 40 1205
95 % 34 40 1431 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.3
PDBFlex
90 % 34 40 1455
70 % 34 40 1461
50 % 48 74 793
40 % 48 74 823
30 % 50 79 772

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures