Sequence Similarity Clusters for the Entities in PDB 1NFX

Entity #1 | Chains: A
COAGULATION FACTOR XA, heavy chain protein, length: 254 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 84 134 211
95 % 84 134 269 Flexibility: No
Max RMSD: 2.3, Avg RMSD: 0.5
PDBFlex
90 % 84 134 280
70 % 84 135 320
50 % 603 708 14
40 % 1426 1873 4
30 % 1434 1887 7
Entity #2 | Chains: B
Coagulation factor XA, light chain protein, length: 134 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 34 40 1192
95 % 34 40 1418
90 % 34 40 1445
70 % 34 40 1453
50 % 48 74 791
40 % 48 74 822
30 % 50 79 769

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures