Sequence Similarity Clusters for the Entities in PDB 1NFX

Entity #1 | Chains: A
COAGULATION FACTOR XA, heavy chain protein, length: 254 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 72 119 218
95 % 84 134 260 Flexibility: No
Max RMSD: 2.3, Avg RMSD: 0.5
PDBFlex
90 % 84 134 274
70 % 84 135 309
50 % 595 697 14
40 % 1326 1719 4
30 % 1425 1869 6
Entity #2 | Chains: B
Coagulation factor XA, light chain protein, length: 134 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 33 39 1032
95 % 34 40 1365
90 % 34 40 1392
70 % 34 40 1409
50 % 48 74 764
40 % 48 74 801
30 % 48 74 791

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures