Sequence Similarity Clusters for the Entities in PDB 1NFX

Entity #1 | Chains: A
COAGULATION FACTOR XA, heavy chain protein, length: 254 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 84 135 210
95 % 84 135 268 Flexibility: No
Max RMSD: 2.3, Avg RMSD: 0.5
PDBFlex
90 % 84 135 279
70 % 84 136 323
50 % 603 709 14
40 % 1434 1884 4
30 % 1442 1898 7
Entity #2 | Chains: B
Coagulation factor XA, light chain protein, length: 134 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 34 40 1205
95 % 34 40 1431 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.3
PDBFlex
90 % 34 40 1455
70 % 34 40 1460
50 % 48 74 793
40 % 48 74 823
30 % 50 79 772

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures