Sequence Similarity Clusters for the Entities in PDB 1NFX

Entity #1 | Chains: A
COAGULATION FACTOR XA, heavy chain protein, length: 254 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 72 119 208
95 % 84 134 247 Flexibility: No
Max RMSD: 2.3, Avg RMSD: 0.5
PDBFlex
90 % 84 134 261
70 % 84 135 288
50 % 577 677 14
40 % 1300 1682 4
30 % 1399 1831 6
Entity #2 | Chains: B
Coagulation factor XA, light chain protein, length: 134 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 33 39 987
95 % 34 40 1321 Flexibility: No
Max RMSD: 3.8, Avg RMSD: 0.4
PDBFlex
90 % 34 40 1346
70 % 34 40 1363
50 % 48 74 739
40 % 48 74 769
30 % 48 74 763

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.