Sequence Similarity Clusters for the Entities in PDB 1NFU

Entity #1 | Chains: A
COAGULATION FACTOR XA, HEAVY CHAIN protein, length: 254 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 62 119 208
95 % 74 134 247 Flexibility: No
Max RMSD: 2.3, Avg RMSD: 0.5
PDBFlex
90 % 74 134 261
70 % 74 135 288
50 % 561 677 14
40 % 1250 1682 4
30 % 1346 1831 6
Entity #2 | Chains: B
COAGULATION FACTOR XA, LIGHT CHAIN protein, length: 195 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 60550
95 % 1 1 42239
90 % 1 1 40157
70 % 1 1 35433
50 % 1 1 30230
40 % 1 1 26672
30 % 1 1 22615

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.