Sequence Similarity Clusters for the Entities in PDB 1NFU

Entity #1 | Chains: A
COAGULATION FACTOR XA, HEAVY CHAIN protein, length: 254 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 62 119 252
95 % 75 136 283 Flexibility: No
Max RMSD: 2.3, Avg RMSD: 0.5
PDBFlex
90 % 75 136 299
70 % 75 137 339
50 % 75 137 411
40 % 184 289 177
30 % 1403 1912 5
Entity #2 | Chains: B
COAGULATION FACTOR XA, LIGHT CHAIN protein, length: 195 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 73108
95 % 1 1 56437
90 % 1 1 53269
70 % 1 1 46497
50 % 1 1 37357
40 % 1 1 33798
30 % 1 1 31946

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures