Sequence Similarity Clusters for the Entities in PDB 1NFK

Entity #1 | Chains: C,D
DNA (5'-D(*TP*GP*GP*GP*AP*AP*TP*TP*CP*CP*C)-3') dna, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: A,B
PROTEIN (NUCLEAR FACTOR KAPPA-B (NF-KB)) protein, length: 325 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 9 3227
95 % 1 10 3680 Flexibility: Low
Max RMSD: 6.8, Avg RMSD: 2.8
PDBFlex
90 % 1 10 3733
70 % 1 10 3687
50 % 2 12 3020
40 % 3 26 1241
30 % 3 26 1214

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.