Sequence Similarity Clusters for the Entities in PDB 1NFI

Entity #1 | Chains: A,C
NF-KAPPA-B P65 protein, length: 301 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 33407
95 % 4 10 3194
90 % 4 10 3236
70 % 4 10 3200
50 % 4 13 2517
40 % 7 25 1245
30 % 7 25 1221
Entity #2 | Chains: B,D
NF-KAPPA-B P50 protein, length: 107 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 42780
95 % 8 10 3858
90 % 8 10 3888
70 % 8 10 3818
50 % 20 24 1250
40 % 20 24 1261
30 % 20 24 1240
Entity #3 | Chains: E,F
I-KAPPA-B-ALPHA protein, length: 213 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 24961
95 % 2 2 20842
90 % 2 2 20251
70 % 2 2 18678
50 % 2 2 16257
40 % 2 2 14520
30 % 2 2 12414

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.