Sequence Similarity Clusters for the Entities in PDB 1NFI

Entity #1 | Chains: A,C
NF-KAPPA-B P65 protein, length: 301 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 36060
95 % 4 10 3442
90 % 4 10 3485
70 % 4 10 3439
50 % 4 13 2731
40 % 7 25 1342
30 % 7 25 1321
Entity #2 | Chains: B,D
NF-KAPPA-B P50 protein, length: 107 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 46040
95 % 8 10 4172
90 % 8 10 4201
70 % 8 10 4128
50 % 20 24 1343
40 % 20 24 1354
30 % 20 24 1336
Entity #3 | Chains: E,F
I-KAPPA-B-ALPHA protein, length: 213 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 26978
95 % 2 2 22529
90 % 2 2 21870
70 % 2 2 20063
50 % 2 2 17390
40 % 2 2 15510
30 % 2 2 13257

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.