Sequence Similarity Clusters for the Entities in PDB 1NFI

Entity #1 | Chains: A,C
NF-KAPPA-B P65 protein, length: 301 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 37836
95 % 5 11 2924 Flexibility: Medium
Max RMSD: 10.7, Avg RMSD: 4.8
PDBFlex
90 % 5 11 2982
70 % 5 11 2935
50 % 5 14 2410
40 % 8 26 1288
30 % 8 26 1284
Entity #2 | Chains: B,D
NF-KAPPA-B P50 protein, length: 107 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 41244
95 % 8 10 4480 Flexibility: Low
Max RMSD: 17.6, Avg RMSD: 2.6
PDBFlex
90 % 8 10 4523
70 % 8 10 4409
50 % 20 24 1428
40 % 20 24 1382
30 % 20 24 1375
Entity #3 | Chains: E,F
I-KAPPA-B-ALPHA protein, length: 213 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 27542
95 % 2 2 24154 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 1.5
PDBFlex
90 % 2 2 23364
70 % 2 2 21258
50 % 2 2 18288
40 % 2 2 16171
30 % 2 2 13550

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures