Sequence Similarity Clusters for the Entities in PDB 1NFI

Entity #1 | Chains: A,C
NF-KAPPA-B P65 protein, length: 301 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 34935
95 % 4 10 3342
90 % 4 10 3385
70 % 4 10 3339
50 % 4 13 2657
40 % 7 25 1306
30 % 7 25 1284
Entity #2 | Chains: B,D
NF-KAPPA-B P50 protein, length: 107 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 44669
95 % 8 10 4042
90 % 8 10 4065
70 % 8 10 3987
50 % 20 24 1309
40 % 20 24 1320
30 % 20 24 1300
Entity #3 | Chains: E,F
I-KAPPA-B-ALPHA protein, length: 213 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 26072
95 % 2 2 21756
90 % 2 2 21138
70 % 2 2 19478
50 % 2 2 16922
40 % 2 2 15100
30 % 2 2 12909

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.