Sequence Similarity Clusters for the Entities in PDB 1NFI

Entity #1 | Chains: A,C
NF-KAPPA-B P65 protein, length: 301 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 35505
95 % 4 10 3395 Flexibility: Medium
Max RMSD: 10.7, Avg RMSD: 4.5
PDBFlex
90 % 4 10 3440
70 % 4 10 3392
50 % 4 13 2700
40 % 7 25 1320
30 % 7 25 1303
Entity #2 | Chains: B,D
NF-KAPPA-B P50 protein, length: 107 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 45410
95 % 8 10 4109 Flexibility: Low
Max RMSD: 17.6, Avg RMSD: 2.9
PDBFlex
90 % 8 10 4137
70 % 8 10 4058
50 % 20 24 1322
40 % 20 24 1333
30 % 20 24 1318
Entity #3 | Chains: E,F
I-KAPPA-B-ALPHA protein, length: 213 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 26507
95 % 2 2 22129 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 1.5
PDBFlex
90 % 2 2 21489
70 % 2 2 19777
50 % 2 2 17162
40 % 2 2 15308
30 % 2 2 13091

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.