Sequence Similarity Clusters for the Entities in PDB 1NFI

Entity #1 | Chains: A,C
NF-KAPPA-B P65 protein, length: 301 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 37107
95 % 5 11 2837 Flexibility: Medium
Max RMSD: 10.7, Avg RMSD: 4.8
PDBFlex
90 % 5 11 2880
70 % 5 11 2854
50 % 5 14 2327
40 % 8 26 1267
30 % 8 26 1238
Entity #2 | Chains: B,D
NF-KAPPA-B P50 protein, length: 107 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 47320
95 % 8 10 4296 Flexibility: Low
Max RMSD: 17.6, Avg RMSD: 2.6
PDBFlex
90 % 8 10 4324
70 % 8 10 4248
50 % 20 24 1377
40 % 20 24 1386
30 % 20 24 1369
Entity #3 | Chains: E,F
I-KAPPA-B-ALPHA protein, length: 213 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 27752
95 % 2 2 23156 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 1.5
PDBFlex
90 % 2 2 22456
70 % 2 2 20591
50 % 2 2 17831
40 % 2 2 15893
30 % 2 2 13593

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures