Sequence Similarity Clusters for the Entities in PDB 1NFD

Entity #1 | Chains: A,C
N15 ALPHA-BETA T-CELL RECEPTOR protein, length: 203 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 43007
95 % 1 1 32603
90 % 1 1 31148
70 % 4 5 7108
50 % 269 334 76
40 % 269 334 98
30 % 4602 5941 1
Entity #2 | Chains: B,D
N15 ALPHA-BETA T-CELL RECEPTOR protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 13212
95 % 2 2 12718 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 1.1
PDBFlex
90 % 2 2 12535
70 % 279 343 25
50 % 279 346 67
40 % 279 346 89
30 % 4603 5941 1
Entity #3 | Chains: E,G
H57 FAB protein, length: 212 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 42511
95 % 1 1 32293 Flexibility: Low
Max RMSD: 0.5, Avg RMSD: 0.5
PDBFlex
90 % 1 1 30889
70 % 1 1 27580
50 % 3863 5011 1
40 % 3863 5011 1
30 % 4604 5941 1
Entity #4 | Chains: F,H
H57 FAB protein, length: 222 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 41466
95 % 1 1 31705 Flexibility: Low
Max RMSD: 0.7, Avg RMSD: 0.7
PDBFlex
90 % 1 1 30487
70 % 1863 2424 2
50 % 3864 5011 1
40 % 3864 5011 1
30 % 4605 5941 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures