Sequence Similarity Clusters for the Entities in PDB 1NFD

Entity #1 | Chains: A,C
N15 ALPHA-BETA T-CELL RECEPTOR protein, length: 203 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 43682
95 % 1 1 31856 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 1.2
PDBFlex
90 % 1 1 30508
70 % 273 340 28
50 % 273 341 77
40 % 273 341 99
30 % 5544 7240 1
Entity #2 | Chains: B,D
N15 ALPHA-BETA T-CELL RECEPTOR protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 13538
95 % 2 2 12803 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 1.1
PDBFlex
90 % 2 2 12593
70 % 283 350 25
50 % 283 353 67
40 % 283 353 87
30 % 5545 7240 1
Entity #3 | Chains: E,G
H57 FAB protein, length: 212 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 37501
95 % 1 1 35965 Flexibility: Low
Max RMSD: 0.5, Avg RMSD: 0.5
PDBFlex
90 % 1 1 34350
70 % 1 1 30562
50 % 3936 5152 1
40 % 4442 5806 1
30 % 5546 7240 1
Entity #4 | Chains: F,H
H57 FAB protein, length: 222 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 37502
95 % 1 1 31857 Flexibility: Low
Max RMSD: 0.7, Avg RMSD: 0.7
PDBFlex
90 % 1 1 30509
70 % 1901 2497 2
50 % 3937 5152 1
40 % 4443 5806 1
30 % 5547 7240 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures