Sequence Similarity Clusters for the Entities in PDB 1NFD

Entity #1 | Chains: A,C
N15 ALPHA-BETA T-CELL RECEPTOR protein, length: 203 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 41590
95 % 1 1 31592
90 % 1 1 30222
70 % 4 5 6878
50 % 239 303 79
40 % 239 303 96
30 % 4295 5571 1
Entity #2 | Chains: B,D
N15 ALPHA-BETA T-CELL RECEPTOR protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 12720
95 % 2 2 12283 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 1.1
PDBFlex
90 % 2 2 12111
70 % 249 312 29
50 % 249 315 72
40 % 249 315 92
30 % 4296 5571 1
Entity #3 | Chains: E,G
H57 FAB protein, length: 212 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 41102
95 % 1 1 31290 Flexibility: Low
Max RMSD: 0.5, Avg RMSD: 0.5
PDBFlex
90 % 1 1 29964
70 % 1 1 26805
50 % 3627 4717 1
40 % 3627 4717 1
30 % 4297 5571 1
Entity #4 | Chains: F,H
H57 FAB protein, length: 222 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 40095
95 % 1 1 30722 Flexibility: Low
Max RMSD: 0.7, Avg RMSD: 0.7
PDBFlex
90 % 1 1 29571
70 % 1750 2282 2
50 % 3628 4717 1
40 % 3628 4717 1
30 % 4298 5571 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.