Sequence Similarity Clusters for the Entities in PDB 1NF5

Entity #1 | Chains: A,C
Alpha-lactalbumin protein, length: 123 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 12 2593
95 % 3 12 2876 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.7
PDBFlex
90 % 3 12 2938
70 % 3 12 2909
50 % 12 29 1008
40 % 820 1054 10
30 % 820 1054 20
Entity #2 | Chains: B,D
beta-1,4-galactosyltransferase protein, length: 286 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 15 1797
95 % 4 20 1550 Flexibility: Low
Max RMSD: 3.5, Avg RMSD: 1.1
PDBFlex
90 % 10 39 618
70 % 10 39 667
50 % 10 39 707
40 % 12 43 706
30 % 12 43 709

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

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Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1YRO 2 B, D BETA-1,4-GALACTOSYLTRANSFERASE CHAINS A AND B FORM FIRST, C AND D SECOND LACTOSE SYNTHASE COMPLEX CATALYTIC DOMAIN, RESIDUES 130-402 9913
2 1PZT 1 A Beta-1,4-galactosyltransferase 1 CATALYTIC DOMAIN, RESIDUES 130-402 9913
3 1NMM 2 B, D BETA-1,4-GALACTOSYLTRANSFERASE CHAINS A AND B FORM FIRST, C AND D SECOND LACTOSE SYNTHASE COMPLEX Catalytic Domain, residues 130-402 9913
4 1NF5 2 B, D beta-1,4-galactosyltransferase 9913
5 1NKH 2 B, D BETA-1,4-GALACTOSYLTRANSFERASE CHAINS A AND B FORM FIRST, C AND D SECOND LACTOSE SYNTHASE COMPLEX CATALYTIC DOMAIN, RESIDUES 130-402 9913
6 2FYC 2 B, D beta-1,4-galactosyltransferase residues 57-329 9913 2.4.1 | Details
7 2FYD 2 B, D beta-1,4-galactosyltransferase residues 57-329 9913 2.4.1 | Details
8 1NQI 2 B, D BETA-1,4-GALACTOSYLTRANSFERASE CHAINS A AND B FORM FIRST, C AND D SECOND LACTOSE SYNTHASE COMPLEX CATALYTIC DOMAIN, RESIDUES 130-402 9913
9 1OQM 2 B, D beta-1,4-galactosyltransferase residues 57-329 9913
10 1TVY 1 A, B Beta-1,4-galactosyltransferase 1 catalytic domain 9913
11 1TW5 1 A, B Beta-1,4-galactosyltransferase 1 catalytic domain 9913
12 1TW1 1 A, B Beta-1,4-galactosyltransferase 1 catalytic domain 9913
13 1O0R 1 A, B beta-1,4-galactosyltransferase 9913
14 1O23 2 B, D BETA-1,4-GALACTOSYLTRANSFERASE RESIDUES 57-329 9913
15 1PZY 2 B, D BETA-1,4-GALACTOSYLTRANSFERASE CHAINS C AND D FORM FIRST, B AND D SECOND LACTOSE SYNTHASE COMPLEX Catalytic Domain, residues 130-402 9913
16 4KRV 1 A, B Beta-1,4-galactosyltransferase 1 Catalytic Domain, UNP residues 130-402 9913
17 1NWG 2 B, D beta-1,4-galactosyltransferase residues 57-329 9913
18 1NHE 2 B, D BETA-1,4-GALACTOSYLTRANSFERASE CHAINS A AND B FORM FIRST, C AND D SECOND LACTOSE SYNTHASE COMPLEX CATALYTIC DOMAIN, RESIDUES 130-402 9913
19 1FGX 1 A, B BETA 1,4 GALACTOSYLTRANSFERASE CATALYTIC DOMAIN 9913
20 1FR8 1 A, B BETA 1,4 GALACTOSYLTRANSFERASE CATALYTIC DOMAIN 9913