Sequence Similarity Clusters for the Entities in PDB 1NF5

Entity #1 | Chains: A,C
Alpha-lactalbumin protein, length: 123 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 12 2530
95 % 3 12 2810 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.7
PDBFlex
90 % 3 12 2873
70 % 3 12 2845
50 % 12 29 984
40 % 815 1049 10
30 % 815 1049 19
Entity #2 | Chains: B,D
beta-1,4-galactosyltransferase protein, length: 286 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 15 1737
95 % 4 20 1506 Flexibility: Low
Max RMSD: 3.5, Avg RMSD: 1.1
PDBFlex
90 % 10 39 590
70 % 10 39 637
50 % 10 39 682
40 % 12 43 683
30 % 12 43 684

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1YRO 2 B, D BETA-1,4-GALACTOSYLTRANSFERASE CHAINS A AND B FORM FIRST, C AND D SECOND LACTOSE SYNTHASE COMPLEX CATALYTIC DOMAIN, RESIDUES 130-402 9913
2 1NMM 2 B, D BETA-1,4-GALACTOSYLTRANSFERASE CHAINS A AND B FORM FIRST, C AND D SECOND LACTOSE SYNTHASE COMPLEX Catalytic Domain, residues 130-402 9913
3 1NF5 2 B, D beta-1,4-galactosyltransferase 9913
4 1NKH 2 B, D BETA-1,4-GALACTOSYLTRANSFERASE CHAINS A AND B FORM FIRST, C AND D SECOND LACTOSE SYNTHASE COMPLEX CATALYTIC DOMAIN, RESIDUES 130-402 9913
5 2FYC 2 B, D beta-1,4-galactosyltransferase residues 57-329 9913 2.4.1 | Details
6 1NQI 2 B, D BETA-1,4-GALACTOSYLTRANSFERASE CHAINS A AND B FORM FIRST, C AND D SECOND LACTOSE SYNTHASE COMPLEX CATALYTIC DOMAIN, RESIDUES 130-402 9913
7 1OQM 2 B, D beta-1,4-galactosyltransferase residues 57-329 9913
8 1TVY 1 A, B Beta-1,4-galactosyltransferase 1 catalytic domain 9913
9 1TW5 1 A, B Beta-1,4-galactosyltransferase 1 catalytic domain 9913
10 1TW1 1 A, B Beta-1,4-galactosyltransferase 1 catalytic domain 9913
11 1O0R 1 A, B beta-1,4-galactosyltransferase 9913
12 1O23 2 B, D BETA-1,4-GALACTOSYLTRANSFERASE RESIDUES 57-329 9913
13 4KRV 1 A, B Beta-1,4-galactosyltransferase 1 Catalytic Domain, UNP residues 130-402 9913
14 1NWG 2 B, D beta-1,4-galactosyltransferase residues 57-329 9913
15 1NHE 2 B, D BETA-1,4-GALACTOSYLTRANSFERASE CHAINS A AND B FORM FIRST, C AND D SECOND LACTOSE SYNTHASE COMPLEX CATALYTIC DOMAIN, RESIDUES 130-402 9913