Sequence Similarity Clusters for the Entities in PDB 1NF5

Entity #1 | Chains: A,C
Alpha-lactalbumin protein, length: 123 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 12 2530
95 % 3 12 2810 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.7
PDBFlex
90 % 3 12 2873
70 % 3 12 2845
50 % 12 29 984
40 % 815 1049 10
30 % 815 1049 19
Entity #2 | Chains: B,D
beta-1,4-galactosyltransferase protein, length: 286 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 15 1737
95 % 4 20 1506 Flexibility: Low
Max RMSD: 3.5, Avg RMSD: 1.1
PDBFlex
90 % 10 39 590
70 % 10 39 637
50 % 10 39 682
40 % 12 43 683
30 % 12 43 684

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

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ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1B9O 1 A PROTEIN (ALPHA-LACTALBUMIN) 9606
2 3B0O 1 A, B Alpha-lactalbumin 9606
3 3B0K 1 A, B Alpha-lactalbumin 9925
4 1ALC 1 A ALPHA-LACTALBUMIN 9556
5 1FKQ 1 A ALPHA-LACTALBUMIN B-HELIX 9925 2.4.1.22 | Details
6 5X84 1 A Alpha-lactalbumin UNP residues 20-142 9913
7 1HFX 1 A ALPHA-LACTALBUMIN 10141 2.4.1.22 | Details
8 1A4V 1 A ALPHA-LACTALBUMIN CALCIUM-BINDING REGION 9606 2.4.1.22 | Details
9 3B0I 1 A Alpha-lactalbumin 9606
10 1YRO 1 A, C ALPHA-LACTALBUMIN CHAINS A AND B FORM FIRST, C AND D SECOND LACTOSE SYNTHASE COMPLEX REGULATORY SUBUNIT OF LACTOSE SYNTHASE 10090
11 1NMM 1 A, C ALPHA-LACTALBUMIN CHAINS A AND B FORM FIRST, C AND D SECOND LACTOSE SYNTHASE COMPLEX REGULATORY SUBUNIT OF LACTOSE SYNTHASE 10090
12 1NF5 1 A, C Alpha-lactalbumin 10090
13 1FKV 1 A ALPHA-LACTALBUMIN B-HELIX 9925 2.4.1.22 | Details
14 1NKH 1 A, C ALPHA-LACTALBUMIN CHAINS A AND B FORM FIRST, C AND D SECOND LACTOSE SYNTHASE COMPLEX REGULATORY SUBUNIT OF LACTOSE SYNTHASE 10090
15 1HMK 1 A PROTEIN (ALPHA-LACTALBUMIN) 9925 2.4.1.22 | Details
16 2FYC 1 A, C Alpha-lactalbumin 10090
17 2FYD 1 A, C Alpha-lactalbumin 10090
18 1NQI 1 A, C ALPHA-LACTALBUMIN CHAINS A AND B FORM FIRST, C AND D SECOND LACTOSE SYNTHASE COMPLEX REGULATORY SUBUNIT OF LACTOSE SYNTHASE 10090
19 1OQM 1 A, C Alpha-lactalbumin residues 21-143 10090
20 1F6R 1 A, B, C, D, E, F ALPHA-LACTALBUMIN 9913
21 1HFY 1 A, B ALPHA-LACTALBUMIN 9925 2.4.1.22 | Details
22 1F6S 1 A, B, C, D, E, F ALPHA-LACTALBUMIN 9913
23 1O23 1 A, C ALPHA-LACTALBUMIN REGULATORY SUBUNIT OF LACTOSE SYNTHASE 10090
24 1PZY 1 A, C ALPHA-LACTALBUMIN CHAINS A AND B FORM FIRST, B AND D SECOND LACTOSE SYNTHASE COMPLEX REGULATORY SUBUNIT OF LACTOSE SYNTHASE 10090
25 1HFZ 1 A, B, C, D ALPHA-LACTALBUMIN 9913 2.4.1.22 | Details
26 1NWG 1 A, C Alpha-lactalbumin REGULATORY SUBUNIT OF LACTOSE SYNTHASE 10090
27 1NHE 1 A, C ALPHA-LACTALBUMIN CHAINS A AND B FORM FIRST, C AND D SECOND LACTOSE SYNTHASE COMPLEX REGULATORY SUBUNIT OF LACTOSE SYNTHASE 10090
28 4L41 1 A, B Alpha-lactalbumin UNP residues 19-142 9606
29 2G4N 1 A, B, C, D, E, F Alpha-lactalbumin 9913