Sequence Similarity Clusters for the Entities in PDB 1NF5

Entity #1 | Chains: A,C
Alpha-lactalbumin protein, length: 123 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 12 2297
95 % 3 12 2589 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.7
PDBFlex
90 % 3 12 2655
70 % 3 12 2638
50 % 11 28 960
40 % 788 1016 10
30 % 788 1016 18
Entity #2 | Chains: B,D
beta-1,4-galactosyltransferase protein, length: 286 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 15 1654
95 % 4 20 1424 Flexibility: Low
Max RMSD: 3.5, Avg RMSD: 1.1
PDBFlex
90 % 9 37 600
70 % 9 37 643
50 % 9 37 689
40 % 11 41 674
30 % 11 41 675

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1B9O 1 A PROTEIN (ALPHA-LACTALBUMIN) 9606
2 3B0O 1 A, B Alpha-lactalbumin 9606
3 3B0K 1 A, B Alpha-lactalbumin 9925
4 1ALC 1 A ALPHA-LACTALBUMIN 9556
5 1FKQ 1 A ALPHA-LACTALBUMIN B-HELIX 9925 2.4.1.22 | Details
6 1HFX 1 A ALPHA-LACTALBUMIN 10141 2.4.1.22 | Details
7 1A4V 1 A ALPHA-LACTALBUMIN CALCIUM-BINDING REGION 9606 2.4.1.22 | Details
8 3B0I 1 A Alpha-lactalbumin 9606
9 1YRO 1 A, C ALPHA-LACTALBUMIN CHAINS A AND B FORM FIRST, C AND D SECOND LACTOSE SYNTHASE COMPLEX REGULATORY SUBUNIT OF LACTOSE SYNTHASE 10090
10 1NMM 1 A, C ALPHA-LACTALBUMIN CHAINS A AND B FORM FIRST, C AND D SECOND LACTOSE SYNTHASE COMPLEX REGULATORY SUBUNIT OF LACTOSE SYNTHASE 10090
11 1NF5 1 A, C Alpha-lactalbumin 10090
12 1FKV 1 A ALPHA-LACTALBUMIN B-HELIX 9925 2.4.1.22 | Details
13 1NKH 1 A, C ALPHA-LACTALBUMIN CHAINS A AND B FORM FIRST, C AND D SECOND LACTOSE SYNTHASE COMPLEX REGULATORY SUBUNIT OF LACTOSE SYNTHASE 10090
14 1HMK 1 A PROTEIN (ALPHA-LACTALBUMIN) 9925 2.4.1.22 | Details
15 2FYC 1 A, C Alpha-lactalbumin 10090
16 2FYD 1 A, C Alpha-lactalbumin 10090
17 1NQI 1 A, C ALPHA-LACTALBUMIN CHAINS A AND B FORM FIRST, C AND D SECOND LACTOSE SYNTHASE COMPLEX REGULATORY SUBUNIT OF LACTOSE SYNTHASE 10090
18 1OQM 1 A, C Alpha-lactalbumin residues 21-143 10090
19 1F6R 1 A, B, C, D, E, F ALPHA-LACTALBUMIN 9913
20 1HFY 1 A, B ALPHA-LACTALBUMIN 9925 2.4.1.22 | Details
21 1F6S 1 A, B, C, D, E, F ALPHA-LACTALBUMIN 9913
22 1O23 1 A, C ALPHA-LACTALBUMIN REGULATORY SUBUNIT OF LACTOSE SYNTHASE 10090
23 1PZY 1 A, C ALPHA-LACTALBUMIN CHAINS A AND B FORM FIRST, B AND D SECOND LACTOSE SYNTHASE COMPLEX REGULATORY SUBUNIT OF LACTOSE SYNTHASE 10090
24 1HFZ 1 A, B, C, D ALPHA-LACTALBUMIN 9913 2.4.1.22 | Details
25 1NWG 1 A, C Alpha-lactalbumin REGULATORY SUBUNIT OF LACTOSE SYNTHASE 10090
26 1NHE 1 A, C ALPHA-LACTALBUMIN CHAINS A AND B FORM FIRST, C AND D SECOND LACTOSE SYNTHASE COMPLEX REGULATORY SUBUNIT OF LACTOSE SYNTHASE 10090
27 4L41 1 A, B Alpha-lactalbumin UNP residues 19-142 9606
28 2G4N 1 A, B, C, D, E, F Alpha-lactalbumin 9913