Sequence Similarity Clusters for the Entities in PDB 1NF5

Entity #1 | Chains: A,C
Alpha-lactalbumin protein, length: 123 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 12 2649
95 % 3 12 2939 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.6
PDBFlex
90 % 3 12 2999
70 % 3 12 2974
50 % 12 29 1029
40 % 827 1064 10
30 % 827 1064 21
Entity #2 | Chains: B,D
beta-1,4-galactosyltransferase protein, length: 286 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 15 1836
95 % 4 20 1578 Flexibility: Low
Max RMSD: 3.5, Avg RMSD: 1.1
PDBFlex
90 % 10 39 633
70 % 10 39 679
50 % 10 39 728
40 % 12 43 720
30 % 12 43 733

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures