Sequence Similarity Clusters for the Entities in PDB 1NF5

Entity #1 | Chains: A,C
Alpha-lactalbumin protein, length: 123 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 12 2569
95 % 3 12 2855 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.7
PDBFlex
90 % 3 12 2918
70 % 3 12 2890
50 % 12 29 1000
40 % 818 1052 10
30 % 818 1052 19
Entity #2 | Chains: B,D
beta-1,4-galactosyltransferase protein, length: 286 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 15 1775
95 % 4 20 1536 Flexibility: Low
Max RMSD: 3.5, Avg RMSD: 1.1
PDBFlex
90 % 10 39 607
70 % 10 39 656
50 % 10 39 699
40 % 12 43 699
30 % 12 43 702

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures