Sequence Similarity Clusters for the Entities in PDB 1NF3

Entity #1 | Chains: A,B
G25K GTP-binding protein, placental isoform protein, length: 195 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 43415
95 % 6 39 912 Flexibility: Low
Max RMSD: 3.7, Avg RMSD: 1.6
PDBFlex
90 % 6 39 944
70 % 22 82 333
50 % 52 143 197
40 % 53 144 205
30 % 441 822 16
Entity #2 | Chains: C,D
PAR-6B protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 47011
95 % 1 1 35212 Flexibility: No
Max RMSD: 0.2, Avg RMSD: 0.2
PDBFlex
90 % 1 1 33619
70 % 1 3 18492
50 % 1 3 16034
40 % 1 3 14265
30 % 1 3 12198

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures