Sequence Similarity Clusters for the Entities in PDB 1NF3

Entity #1 | Chains: A,B
G25K GTP-binding protein, placental isoform protein, length: 195 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 41923
95 % 6 37 914 Flexibility: Low
Max RMSD: 3.7, Avg RMSD: 1.6
PDBFlex
90 % 6 37 947
70 % 22 78 327
50 % 50 137 194
40 % 51 138 208
30 % 417 782 16
Entity #2 | Chains: C,D
PAR-6B protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 45438
95 % 1 1 34100 Flexibility: No
Max RMSD: 0.2, Avg RMSD: 0.2
PDBFlex
90 % 1 1 32599
70 % 1 3 17876
50 % 1 3 15533
40 % 1 3 13835
30 % 1 3 11841

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.