Sequence Similarity Clusters for the Entities in PDB 1NF3

Entity #1 | Chains: A,B
G25K GTP-binding protein, placental isoform protein, length: 195 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 42837
95 % 6 39 904 Flexibility: Low
Max RMSD: 3.7, Avg RMSD: 1.6
PDBFlex
90 % 6 39 934
70 % 22 82 326
50 % 52 143 193
40 % 53 144 203
30 % 438 817 16
Entity #2 | Chains: C,D
PAR-6B protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 46403
95 % 1 1 34766 Flexibility: No
Max RMSD: 0.2, Avg RMSD: 0.2
PDBFlex
90 % 1 1 33202
70 % 1 3 18250
50 % 1 3 15835
40 % 1 3 14093
30 % 1 3 12057

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures