Sequence Similarity Clusters for the Entities in PDB 1NEX

Entity #1 | Chains: A,C
Centromere DNA-binding protein complex CBF3 subunit D protein, length: 169 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 13873
95 % 3 3 13228 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 0.7
PDBFlex
90 % 3 3 13011
70 % 3 4 10263
50 % 23 38 733
40 % 23 38 765
30 % 23 38 764
Entity #2 | Chains: B,D
CDC4 protein protein, length: 464 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 11883
95 % 3 3 11712 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.7
PDBFlex
90 % 3 3 11558
70 % 3 3 10940
50 % 3 3 9864
40 % 3 3 9016
30 % 6 7 5250
Entity #3 | Chains: E,F
GLL(TPO)PPQSG protein, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures