Sequence Similarity Clusters for the Entities in PDB 1NEX

Entity #1 | Chains: A,C
Centromere DNA-binding protein complex CBF3 subunit D protein, length: 169 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 14934
95 % 3 3 13966 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.7
PDBFlex
90 % 3 3 13721
70 % 3 4 10637
50 % 23 38 741
40 % 23 38 777
30 % 23 38 774
Entity #2 | Chains: B,D
CDC4 protein protein, length: 464 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 14936
95 % 3 3 13968 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.7
PDBFlex
90 % 3 3 13723
70 % 3 3 12842
50 % 3 3 11408
40 % 3 3 10246
30 % 6 7 5532
Entity #3 | Chains: E,F
GLL(TPO)PPQSG protein, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures