Sequence Similarity Clusters for the Entities in PDB 1NEX

Entity #1 | Chains: A,C
Centromere DNA-binding protein complex CBF3 subunit D protein, length: 169 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 13341
95 % 3 3 12763 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 0.7
PDBFlex
90 % 3 3 12549
70 % 3 3 11820
50 % 21 35 765
40 % 21 35 798
30 % 21 35 789
Entity #2 | Chains: B,D
CDC4 protein protein, length: 464 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 11416
95 % 3 3 11286 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.7
PDBFlex
90 % 3 3 11136
70 % 3 3 10553
50 % 3 3 9533
40 % 3 3 8721
30 % 6 7 5069
Entity #3 | Chains: E,F
GLL(TPO)PPQSG protein, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.