Sequence Similarity Clusters for the Entities in PDB 1NEX

Entity #1 | Chains: A,C
Centromere DNA-binding protein complex CBF3 subunit D protein, length: 169 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 12903
95 % 3 3 12344 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.7
PDBFlex
90 % 3 3 12142
70 % 3 3 11422
50 % 20 34 750
40 % 20 34 777
30 % 20 34 769
Entity #2 | Chains: B,D
CDC4 protein protein, length: 464 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 11050
95 % 3 3 10922 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.7
PDBFlex
90 % 3 3 10777
70 % 3 3 10206
50 % 3 3 9240
40 % 3 3 8452
30 % 5 6 5415
Entity #3 | Chains: E,F
GLL(TPO)PPQSG protein, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.