Sequence Similarity Clusters for the Entities in PDB 1NEN

Entity #1 | Chains: A
Succinate dehydrogenase flavoprotein subunit protein, length: 588 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 9 10 1862
95 % 9 10 2435 Flexibility: Low
Max RMSD: 3.1, Avg RMSD: 0.9
PDBFlex
90 % 9 10 2501
70 % 9 10 2491
50 % 9 10 2478
40 % 14 22 1197
30 % 54 73 463
Entity #2 | Chains: B
Succinate dehydrogenase iron-sulfur protein protein, length: 238 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 9 2341
95 % 9 10 2558 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 9 10 2618
70 % 9 10 2603
50 % 40 51 696
40 % 40 51 728
30 % 49 68 488
Entity #3 | Chains: C
Succinate dehydrogenase cytochrome b-556 subunit protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 9 2365
95 % 9 10 2631 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.3
PDBFlex
90 % 9 10 2685
70 % 9 10 2673
50 % 9 10 2641
40 % 9 10 2590
30 % 9 10 2447
Entity #4 | Chains: D
Succinate dehydrogenase hydrophobic membrane anchor protein protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 8 2989
95 % 9 10 2646 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 9 10 2699
70 % 9 10 2684
50 % 9 10 2650
40 % 9 10 2599
30 % 9 10 2452

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures