Sequence Similarity Clusters for the Entities in PDB 1NEN

Entity #1 | Chains: A
Succinate dehydrogenase flavoprotein subunit protein, length: 588 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 10 11 2090
95 % 10 11 2392 Flexibility: Low
Max RMSD: 3.1, Avg RMSD: 0.8
PDBFlex
90 % 10 11 2458
70 % 10 11 2452
50 % 41 52 714
40 % 47 65 562
30 % 56 76 477
Entity #2 | Chains: B
Succinate dehydrogenase iron-sulfur protein protein, length: 238 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 9 2774
95 % 9 10 2796 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 9 10 2843
70 % 9 10 2817
50 % 40 51 729
40 % 40 51 758
30 % 49 69 512
Entity #3 | Chains: C
Succinate dehydrogenase cytochrome b-556 subunit protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 9 10 2300
95 % 9 10 2592 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 9 10 2666
70 % 9 10 2648
50 % 9 10 2628
40 % 9 10 2575
30 % 9 10 2412
Entity #4 | Chains: D
Succinate dehydrogenase hydrophobic membrane anchor protein protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 9 10 2249
95 % 9 10 2554 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 9 10 2627
70 % 9 10 2612
50 % 9 10 2601
40 % 9 10 2553
30 % 9 10 2391

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures