Sequence Similarity Clusters for the Entities in PDB 1NEN

Entity #1 | Chains: A
Succinate dehydrogenase flavoprotein subunit protein, length: 588 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 10 11 2147
95 % 10 11 2442 Flexibility: Low
Max RMSD: 3.1, Avg RMSD: 0.8
PDBFlex
90 % 10 11 2509
70 % 10 11 2504
50 % 41 52 727
40 % 47 65 568
30 % 56 76 486
Entity #2 | Chains: B
Succinate dehydrogenase iron-sulfur protein protein, length: 238 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 9 2843
95 % 9 10 2864 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 9 10 2908
70 % 9 10 2878
50 % 40 51 746
40 % 40 51 770
30 % 49 69 518
Entity #3 | Chains: C
Succinate dehydrogenase cytochrome b-556 subunit protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 9 10 2367
95 % 9 10 2654 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 9 10 2725
70 % 9 10 2706
50 % 9 10 2692
40 % 9 10 2642
30 % 9 10 2471
Entity #4 | Chains: D
Succinate dehydrogenase hydrophobic membrane anchor protein protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 9 10 2315
95 % 9 10 2615 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 9 10 2686
70 % 9 10 2669
50 % 9 10 2661
40 % 9 10 2617
30 % 9 10 2446

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures