Sequence Similarity Clusters for the Entities in PDB 1NEK

Entity #1 | Chains: A
Succinate dehydrogenase flavoprotein subunit protein, length: 588 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 11 1747
95 % 6 11 2320 Flexibility: Low
Max RMSD: 3.1, Avg RMSD: 0.9
PDBFlex
90 % 6 11 2379
70 % 6 11 2387
50 % 6 11 2364
40 % 8 24 1138
30 % 31 75 459
Entity #2 | Chains: B
Succinate dehydrogenase iron-sulfur protein protein, length: 238 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 9 2396
95 % 5 10 2623 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 5 10 2680
70 % 5 10 2665
50 % 19 51 715
40 % 19 51 744
30 % 24 68 496
Entity #3 | Chains: C
Succinate dehydrogenase cytochrome b-556 subunit protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 9 2420
95 % 5 10 2695 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.3
PDBFlex
90 % 5 10 2748
70 % 5 10 2734
50 % 5 10 2701
40 % 5 10 2648
30 % 5 10 2502
Entity #4 | Chains: D
Succinate dehydrogenase hydrophobic membrane anchor protein protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 8 3057
95 % 5 10 2710 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 5 10 2763
70 % 5 10 2747
50 % 5 10 2710
40 % 5 10 2657
30 % 5 10 2508

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures