Sequence Similarity Clusters for the Entities in PDB 1NEK

Entity #1 | Chains: A
Succinate dehydrogenase flavoprotein subunit protein, length: 588 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 10 1628
95 % 5 10 2174
90 % 5 10 2232
70 % 5 10 2225
50 % 5 10 2208
40 % 6 20 1190
30 % 29 71 400
Entity #2 | Chains: B
Succinate dehydrogenase iron-sulfur protein protein, length: 238 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 9 2067
95 % 5 10 2282
90 % 5 10 2334
70 % 5 10 2322
50 % 19 51 592
40 % 19 51 631
30 % 24 66 436
Entity #3 | Chains: C
Succinate dehydrogenase cytochrome b-556 subunit protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 9 2090
95 % 5 10 2347
90 % 5 10 2394
70 % 5 10 2384
50 % 5 10 2346
40 % 5 10 2330
30 % 5 10 2202
Entity #4 | Chains: D
Succinate dehydrogenase hydrophobic membrane anchor protein protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 8 2659
95 % 5 10 2362
90 % 5 10 2409
70 % 5 10 2397
50 % 5 10 2357
40 % 5 10 2340
30 % 5 10 2208

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.