Sequence Similarity Clusters for the Entities in PDB 1NEK

Entity #1 | Chains: A
Succinate dehydrogenase flavoprotein subunit protein, length: 588 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 10 1789
95 % 5 10 2356
90 % 5 10 2419
70 % 5 10 2407
50 % 5 10 2399
40 % 6 21 1222
30 % 29 72 458
Entity #2 | Chains: B
Succinate dehydrogenase iron-sulfur protein protein, length: 238 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 9 2243
95 % 5 10 2474
90 % 5 10 2530
70 % 5 10 2516
50 % 19 51 675
40 % 19 51 707
30 % 24 67 485
Entity #3 | Chains: C
Succinate dehydrogenase cytochrome b-556 subunit protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 9 2266
95 % 5 10 2545
90 % 5 10 2595
70 % 5 10 2584
50 % 5 10 2552
40 % 5 10 2505
30 % 5 10 2379
Entity #4 | Chains: D
Succinate dehydrogenase hydrophobic membrane anchor protein protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 8 2868
95 % 5 10 2559
90 % 5 10 2608
70 % 5 10 2594
50 % 5 10 2561
40 % 5 10 2513
30 % 5 10 2383

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.