Sequence Similarity Clusters for the Entities in PDB 1NEK

Entity #1 | Chains: A
Succinate dehydrogenase flavoprotein subunit protein, length: 588 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 10 1826
95 % 5 10 2389 Flexibility: Low
Max RMSD: 3.1, Avg RMSD: 0.9
PDBFlex
90 % 5 10 2452
70 % 5 10 2439
50 % 5 10 2427
40 % 6 21 1232
30 % 29 72 466
Entity #2 | Chains: B
Succinate dehydrogenase iron-sulfur protein protein, length: 238 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 9 2297
95 % 5 10 2514 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 5 10 2570
70 % 5 10 2554
50 % 19 51 686
40 % 19 51 715
30 % 24 67 490
Entity #3 | Chains: C
Succinate dehydrogenase cytochrome b-556 subunit protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 9 2320
95 % 5 10 2584 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.3
PDBFlex
90 % 5 10 2634
70 % 5 10 2622
50 % 5 10 2589
40 % 5 10 2543
30 % 5 10 2413
Entity #4 | Chains: D
Succinate dehydrogenase hydrophobic membrane anchor protein protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 8 2929
95 % 5 10 2598 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 5 10 2647
70 % 5 10 2632
50 % 5 10 2597
40 % 5 10 2551
30 % 5 10 2417

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.