Sequence Similarity Clusters for the Entities in PDB 1NEK

Entity #1 | Chains: A
Succinate dehydrogenase flavoprotein subunit protein, length: 588 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 10 1697
95 % 5 10 2254
90 % 5 10 2321
70 % 5 10 2314
50 % 5 10 2294
40 % 6 20 1228
30 % 29 71 445
Entity #2 | Chains: B
Succinate dehydrogenase iron-sulfur protein protein, length: 238 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 9 2153
95 % 5 10 2373
90 % 5 10 2431
70 % 5 10 2421
50 % 19 51 629
40 % 19 51 663
30 % 24 66 472
Entity #3 | Chains: C
Succinate dehydrogenase cytochrome b-556 subunit protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 9 2175
95 % 5 10 2445
90 % 5 10 2497
70 % 5 10 2487
50 % 5 10 2449
40 % 5 10 2424
30 % 5 10 2290
Entity #4 | Chains: D
Succinate dehydrogenase hydrophobic membrane anchor protein protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 8 2758
95 % 5 10 2460
90 % 5 10 2511
70 % 5 10 2498
50 % 5 10 2459
40 % 5 10 2433
30 % 5 10 2295

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.