Sequence Similarity Clusters for the Entities in PDB 1NED

Entity #1 | Chains: A,B,C
HSLV protein, length: 183 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 9 902
95 % 9 10 929 Flexibility: Low
Max RMSD: 3.2, Avg RMSD: 0.7
PDBFlex
90 % 9 10 963
70 % 15 16 454
50 % 21 23 336
40 % 21 23 354
30 % 21 23 361

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.