Sequence Similarity Clusters for the Entities in PDB 1NDO

Entity #1 | Chains: A,C,E
NAPHTHALENE 1,2-DIOXYGENASE protein, length: 449 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 24 24 1559
95 % 27 27 1837
90 % 27 27 1883
70 % 30 31 1501
50 % 30 31 1541
40 % 41 50 384
30 % 42 52 362
Entity #2 | Chains: B,D,F
NAPHTHALENE 1,2-DIOXYGENASE protein, length: 194 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 27 27 1372
95 % 27 27 1860
90 % 27 27 1910
70 % 30 31 1524
50 % 30 31 1565
40 % 30 31 1590
30 % 30 31 1556

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.