Sequence Similarity Clusters for the Entities in PDB 1NDO

Entity #1 | Chains: A,C,E
NAPHTHALENE 1,2-DIOXYGENASE protein, length: 449 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 24 24 1684
95 % 27 27 1954 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.2
PDBFlex
90 % 27 27 2001
70 % 30 31 1590
50 % 30 31 1634
40 % 41 50 436
30 % 42 52 415
Entity #2 | Chains: B,D,F
NAPHTHALENE 1,2-DIOXYGENASE protein, length: 194 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 27 27 1486
95 % 27 27 1989 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 27 27 2036
70 % 30 31 1615
50 % 30 31 1655
40 % 30 31 1672
30 % 30 31 1631

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures