Sequence Similarity Clusters for the Entities in PDB 1NDO

Entity #1 | Chains: A,C,E
NAPHTHALENE 1,2-DIOXYGENASE protein, length: 449 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 24 24 1633
95 % 27 27 1904 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.2
PDBFlex
90 % 27 27 1950
70 % 30 31 1544
50 % 30 31 1579
40 % 41 50 413
30 % 42 52 389
Entity #2 | Chains: B,D,F
NAPHTHALENE 1,2-DIOXYGENASE protein, length: 194 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 27 27 1437
95 % 27 27 1938 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 27 27 1987
70 % 30 31 1569
50 % 30 31 1603
40 % 30 31 1627
30 % 30 31 1594

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.