Sequence Similarity Clusters for the Entities in PDB 1NDO

Entity #1 | Chains: A,C,E
NAPHTHALENE 1,2-DIOXYGENASE protein, length: 449 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 27 27 1761
95 % 27 27 2067 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.2
PDBFlex
90 % 27 27 2120
70 % 30 31 1681
50 % 30 31 1723
40 % 41 50 461
30 % 42 52 445
Entity #2 | Chains: B,D,F
NAPHTHALENE 1,2-DIOXYGENASE protein, length: 194 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 27 27 1784
95 % 27 27 2095 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 27 27 2151
70 % 30 31 1698
50 % 30 31 1738
40 % 30 31 1732
30 % 30 31 1698

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures