Sequence Similarity Clusters for the Entities in PDB 1NDM

Entity #1 | Chains: A
antibody kappa light chain protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 6 12 3554
95 % 12 22 1846
90 % 14 26 1385
70 % 450 1526 3
50 % 1116 3692 1
40 % 1117 3693 1
30 % 1236 4355 1
Entity #2 | Chains: B
immunoglobulin gamma 1 chain protein, length: 210 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 52205
95 % 5 11 4884
90 % 6 12 4295
70 % 542 1790 1
50 % 1117 3692 1
40 % 1118 3693 1
30 % 1237 4355 1
Entity #3 | Chains: C
Lysozyme C protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 459 563 3
95 % 510 616 4
90 % 521 633 5
70 % 724 848 6
50 % 729 857 6
40 % 750 891 10
30 % 750 891 16

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.