Sequence Similarity Clusters for the Entities in PDB 1NDM

Entity #1 | Chains: A
antibody kappa light chain protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 6 12 3634
95 % 12 22 1881
90 % 14 26 1422
70 % 465 1565 3
50 % 1156 3804 1
40 % 1157 3805 1
30 % 1283 4512 1
Entity #2 | Chains: B
immunoglobulin gamma 1 chain protein, length: 210 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 53237
95 % 5 11 4972
90 % 6 12 4380
70 % 562 1846 1
50 % 1157 3804 1
40 % 1158 3805 1
30 % 1284 4512 1
Entity #3 | Chains: C
Lysozyme C protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 466 571 3
95 % 517 624 4
90 % 528 641 5
70 % 731 856 6
50 % 736 865 6
40 % 757 899 10
30 % 757 899 17

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.