Sequence Similarity Clusters for the Entities in PDB 1NDM

Entity #1 | Chains: A
antibody kappa light chain protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 6 12 4080
95 % 14 25 1798
90 % 16 32 1300
70 % 531 1790 2
50 % 1335 4403 1
40 % 1335 4403 1
30 % 1495 5191 1
Entity #2 | Chains: B
immunoglobulin gamma 1 chain protein, length: 210 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 58393
95 % 5 11 5506
90 % 6 12 4863
70 % 643 2129 1
50 % 1336 4403 1
40 % 1336 4403 1
30 % 1496 5191 1
Entity #3 | Chains: C
Lysozyme C protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 521 632 3
95 % 572 685 4
90 % 583 702 5
70 % 786 918 6
50 % 791 926 6
40 % 812 960 11
30 % 812 960 19

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.