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An Information Portal to 105906 Biological Macromolecular Structures

Crystal structure of Fab fragment of antibody HyHEL-26 complexed with lysozyme
Sequence Clustering and Redundancy Reduction Results
1NDM
Sequence Clusters for the Sequence Entities in PDB 1NDM
Entity #1: Chains: A - antibody kappa light chain protein, length: 214 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 6 12 3156
95% 12 22 1651
90% 14 26 1261
70% 391 1330 3
50% 953 3162 1
40% 954 3163 1
30% 1053 3739 1
Entity #2: Chains: B - immunoglobulin gamma 1 chain protein, length: 210 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 47437
95% 5 11 4372
90% 6 12 3830
70% 462 1524 2
50% 954 3162 1
40% 955 3163 1
30% 1054 3739 1
Entity #3: Chains: C - Lysozyme C protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 403 496 3
95% 450 545 4
90% 461 562 4
70% 664 777 6
50% 668 786 6
40% 689 820 9
30% 689 820 14
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.