Sequence Similarity Clusters for the Entities in PDB 1NDM

Entity #1 | Chains: A
antibody kappa light chain protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 6 12 4245
95 % 14 25 1862
90 % 17 33 1298
70 % 676 2280 1
50 % 1388 4619 1
40 % 1388 4619 1
30 % 1555 5440 1
Entity #2 | Chains: B
immunoglobulin gamma 1 chain protein, length: 210 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 60237
95 % 5 11 5729
90 % 6 12 5054
70 % 669 2238 2
50 % 1389 4619 1
40 % 1389 4619 1
30 % 1556 5440 1
Entity #3 | Chains: C
Lysozyme C protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 535 650 3
95 % 586 703 4
90 % 597 720 5
70 % 801 937 7
50 % 806 945 7
40 % 827 979 11
30 % 827 979 19

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.