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An Information Portal to 111558 Biological Macromolecular Structures

Crystal structure of Fab fragment of antibody HyHEL-26 complexed with lysozyme
Sequence Clustering and Redundancy Reduction Results
1NDM
Sequence Clusters for the Sequence Entities in PDB 1NDM
Entity #1: Chains: A - antibody kappa light chain protein, length: 214 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 6 12 3404
95% 12 22 1758
90% 14 26 1331
70% 423 1445 3
50% 1040 3457 1
40% 1041 3458 1
30% 1146 4083 1
Entity #2: Chains: B - immunoglobulin gamma 1 chain protein, length: 210 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 50078
95% 5 11 4682
90% 6 12 4122
70% 505 1672 1
50% 1041 3457 1
40% 1042 3458 1
30% 1147 4083 1
Entity #3: Chains: C - Lysozyme C protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 441 544 3
95% 492 597 4
90% 503 614 5
70% 706 829 6
50% 711 838 6
40% 732 872 10
30% 732 872 16
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.