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An Information Portal to 110071 Biological Macromolecular Structures

Crystal structure of Fab fragment of antibody HyHEL-26 complexed with lysozyme
Sequence Clustering and Redundancy Reduction Results
1NDM
Sequence Clusters for the Sequence Entities in PDB 1NDM
Entity #1: Chains: A - antibody kappa light chain protein, length: 214 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 6 12 3323
95% 12 22 1723
90% 14 26 1313
70% 412 1412 3
50% 1006 3355 1
40% 1007 3356 1
30% 1112 3971 1
Entity #2: Chains: B - immunoglobulin gamma 1 chain protein, length: 210 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 49353
95% 5 11 4602
90% 6 12 4032
70% 488 1622 2
50% 1007 3355 1
40% 1008 3356 1
30% 1113 3971 1
Entity #3: Chains: C - Lysozyme C protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 434 534 3
95% 485 587 4
90% 496 604 5
70% 699 819 6
50% 704 828 6
40% 725 862 10
30% 725 862 16
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.