POP-OUT | CLOSE

An Information Portal to 110790 Biological Macromolecular Structures

Crystal structure of Fab fragment of antibody HyHEL-26 complexed with lysozyme
Sequence Clustering and Redundancy Reduction Results
1NDM
Sequence Clusters for the Sequence Entities in PDB 1NDM
Entity #1: Chains: A - antibody kappa light chain protein, length: 214 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 6 12 3352
95% 12 22 1742
90% 14 26 1321
70% 421 1434 3
50% 1032 3425 1
40% 1033 3426 1
30% 1138 4043 1
Entity #2: Chains: B - immunoglobulin gamma 1 chain protein, length: 210 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 49704
95% 5 11 4636
90% 6 12 4075
70% 501 1656 1
50% 1033 3425 1
40% 1034 3426 1
30% 1139 4043 1
Entity #3: Chains: C - Lysozyme C protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 439 542 3
95% 490 595 4
90% 501 612 5
70% 704 827 6
50% 709 836 6
40% 730 870 10
30% 730 870 15
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.