Sequence Similarity Clusters for the Entities in PDB 1NDL

Entity #1 | Chains: A,B,C
NUCLEOSIDE DIPHOSPHATE KINASE protein, length: 153 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 13681
95 % 3 3 8026 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.4
PDBFlex
90 % 3 3 7973
70 % 15 34 342
50 % 64 128 55
40 % 77 156 34
30 % 77 157 52

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures