Sequence Similarity Clusters for the Entities in PDB 1NDJ

Entity #1 | Chains: A,B,C,D
Streptavidin protein, length: 127 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 100 123 101
95 % 120 145 79 Flexibility: Low
Max RMSD: 3.3, Avg RMSD: 1.3
PDBFlex
90 % 123 148 79
70 % 123 148 99
50 % 124 149 128
40 % 145 195 102
30 % 153 204 113

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures