Sequence Similarity Clusters for the Entities in PDB 1NDI

Entity #1 | Chains: A,B
Carnitine Acetyltransferase protein, length: 596 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 5 6097
95 % 9 9 3950 Flexibility: Low
Max RMSD: 0.8, Avg RMSD: 0.5
PDBFlex
90 % 11 11 3521
70 % 11 11 3487
50 % 11 11 3388
40 % 16 17 2391
30 % 27 29 1258

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures