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An Information Portal to 105339 Biological Macromolecular Structures

Crystal structure of Fab fragment of antibody HyHEL-8 complexed with its antigen lysozyme
Sequence Clustering and Redundancy Reduction Results
1NDG
Sequence Clusters for the Sequence Entities in PDB 1NDG
Entity #1: Chains: A - antibody kappa light chain protein, length: 214 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 12 3130
95% 6 22 1636
90% 6 24 1421
70% 226 1320 3
50% 549 3142 1
40% 549 3143 1
30% 597 3719 1
Entity #2: Chains: B - immunoglobulin gamma 1 chain protein, length: 210 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 47177
95% 1 1 33166
90% 3 12 3802
70% 270 1514 2
50% 550 3142 1
40% 550 3143 1
30% 598 3719 1
Entity #3: Chains: C - Lysozyme C protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 51971
95% 380 540 4
90% 389 557 4
70% 574 772 6
50% 578 781 6
40% 590 815 9
30% 590 815 14
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.