Sequence Similarity Clusters for the Entities in PDB 1NDG

Entity #1 | Chains: A
antibody kappa light chain protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 12 4462
95 % 8 29 1654
90 % 10 37 1207
70 % 450 2426 1
50 % 921 4913 1
40 % 921 4913 1
30 % 1003 5780 1
Entity #2 | Chains: B
immunoglobulin gamma 1 chain protein, length: 210 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 62326
95 % 1 1 43516
90 % 3 12 5292
70 % 449 2376 2
50 % 922 4913 1
40 % 922 4913 1
30 % 1004 5780 1
Entity #3 | Chains: C
Lysozyme C protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 68112
95 % 522 719 4
90 % 531 736 5
70 % 720 956 7
50 % 724 964 8
40 % 736 998 11
30 % 736 998 20

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures