Sequence Similarity Clusters for the Entities in PDB 1NDG

Entity #1 | Chains: A
antibody kappa light chain protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 12 4538
95 % 9 31 1388
90 % 11 39 1076
70 % 466 2474 1
50 % 954 5011 1
40 % 954 5011 1
30 % 1072 5941 1
Entity #2 | Chains: B
immunoglobulin gamma 1 chain protein, length: 210 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 63054
95 % 1 1 44006
90 % 3 12 5371
70 % 465 2424 2
50 % 955 5011 1
40 % 955 5011 1
30 % 1073 5941 1
Entity #3 | Chains: C
Lysozyme C protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 68887
95 % 522 721 4
90 % 531 738 5
70 % 722 961 7
50 % 726 969 8
40 % 738 1003 11
30 % 738 1003 20

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures