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An Information Portal to 107620 Biological Macromolecular Structures

Crystal structure of Fab fragment of antibody HyHEL-8 complexed with its antigen lysozyme
Sequence Clustering and Redundancy Reduction Results
1NDG
Sequence Clusters for the Sequence Entities in PDB 1NDG
Entity #1: Chains: A - antibody kappa light chain protein, length: 214 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 12 3222
95% 6 22 1680
90% 7 26 1287
70% 233 1349 3
50% 565 3210 1
40% 565 3211 1
30% 613 3793 1
Entity #2: Chains: B - immunoglobulin gamma 1 chain protein, length: 210 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 48179
95% 1 1 33797
90% 3 12 3901
70% 278 1548 2
50% 566 3210 1
40% 566 3211 1
30% 614 3793 1
Entity #3: Chains: C - Lysozyme C protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 53052
95% 395 558 4
90% 404 575 5
70% 589 790 6
50% 593 799 6
40% 605 833 10
30% 605 833 16
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.