Sequence Similarity Clusters for the Entities in PDB 1NDG

Entity #1 | Chains: A
antibody kappa light chain protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 12 3634
95 % 6 22 1881
90 % 7 26 1422
70 % 279 1565 3
50 % 687 3804 1
40 % 687 3805 1
30 % 746 4512 1
Entity #2 | Chains: B
immunoglobulin gamma 1 chain protein, length: 210 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 53236
95 % 1 1 37241
90 % 3 12 4380
70 % 336 1846 1
50 % 688 3804 1
40 % 688 3805 1
30 % 747 4512 1
Entity #3 | Chains: C
Lysozyme C protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 58381
95 % 442 624 4
90 % 451 641 5
70 % 636 856 6
50 % 640 865 6
40 % 652 899 10
30 % 652 899 17

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.