Sequence Similarity Clusters for the Entities in PDB 1NDG

Entity #1 | Chains: A
antibody kappa light chain protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 12 3672
95 % 6 22 1896
90 % 7 26 1432
70 % 285 1583 3
50 % 699 3846 1
40 % 699 3847 1
30 % 758 4574 1
Entity #2 | Chains: B
immunoglobulin gamma 1 chain protein, length: 210 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 53658
95 % 1 1 37529
90 % 3 12 4413
70 % 342 1866 1
50 % 700 3846 1
40 % 700 3847 1
30 % 759 4574 1
Entity #3 | Chains: C
Lysozyme C protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 58834
95 % 445 627 4
90 % 454 644 5
70 % 639 859 6
50 % 643 868 6
40 % 655 902 10
30 % 655 902 17

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.