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An Information Portal to 106082 Biological Macromolecular Structures

Crystal structure of Fab fragment of antibody HyHEL-8 complexed with its antigen lysozyme
Sequence Clustering and Redundancy Reduction Results
1NDG
Sequence Clusters for the Sequence Entities in PDB 1NDG
Entity #1: Chains: A - antibody kappa light chain protein, length: 214 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 12 3167
95% 6 22 1654
90% 7 26 1265
70% 230 1332 3
50% 557 3170 1
40% 557 3171 1
30% 605 3753 1
Entity #2: Chains: B - immunoglobulin gamma 1 chain protein, length: 210 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 47526
95% 1 1 33399
90% 3 12 3838
70% 274 1528 2
50% 558 3170 1
40% 558 3171 1
30% 606 3753 1
Entity #3: Chains: C - Lysozyme C protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 52344
95% 385 545 4
90% 394 562 4
70% 579 777 6
50% 583 786 6
40% 595 820 9
30% 595 820 15
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.