Sequence Similarity Clusters for the Entities in PDB 1NDG

Entity #1 | Chains: A
antibody kappa light chain protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 12 3744
95 % 6 22 1920
90 % 7 26 1452
70 % 290 1620 3
50 % 713 3940 1
40 % 713 3941 1
30 % 772 4669 1
Entity #2 | Chains: B
immunoglobulin gamma 1 chain protein, length: 210 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 54441
95 % 1 1 38049
90 % 3 12 4486
70 % 349 1912 1
50 % 714 3940 1
40 % 714 3941 1
30 % 773 4669 1
Entity #3 | Chains: C
Lysozyme C protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 59699
95 % 450 633 4
90 % 459 650 5
70 % 644 865 6
50 % 648 874 6
40 % 660 908 10
30 % 660 908 17

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.