Sequence Similarity Clusters for the Entities in PDB 1NDG

Entity #1 | Chains: A
antibody kappa light chain protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 12 4342
95 % 8 29 1614
90 % 10 37 1178
70 % 423 2329 1
50 % 865 4717 1
40 % 865 4717 1
30 % 944 5571 1
Entity #2 | Chains: B
immunoglobulin gamma 1 chain protein, length: 210 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 61101
95 % 1 1 42712
90 % 3 12 5161
70 % 422 2282 2
50 % 866 4717 1
40 % 866 4717 1
30 % 945 5571 1
Entity #3 | Chains: C
Lysozyme C protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 66810
95 % 517 713 4
90 % 526 730 5
70 % 715 950 7
50 % 719 958 8
40 % 731 992 11
30 % 731 992 20

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.