Sequence Similarity Clusters for the Entities in PDB 1NDG

Entity #1 | Chains: A
antibody kappa light chain protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 12 3554
95 % 6 22 1846
90 % 7 26 1385
70 % 268 1526 3
50 % 657 3692 1
40 % 657 3693 1
30 % 715 4355 1
Entity #2 | Chains: B
immunoglobulin gamma 1 chain protein, length: 210 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 52204
95 % 1 1 36542
90 % 3 12 4295
70 % 321 1790 1
50 % 658 3692 1
40 % 658 3693 1
30 % 716 4355 1
Entity #3 | Chains: C
Lysozyme C protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 57291
95 % 436 616 4
90 % 445 633 5
70 % 630 848 6
50 % 634 857 6
40 % 646 891 10
30 % 646 891 16

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.