Sequence Similarity Clusters for the Entities in PDB 1NDG

Entity #1 | Chains: A
antibody kappa light chain protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 12 3810
95 % 8 24 1717
90 % 9 28 1355
70 % 302 1648 3
50 % 741 4012 1
40 % 741 4014 1
30 % 802 4750 1
Entity #2 | Chains: B
immunoglobulin gamma 1 chain protein, length: 210 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 55219
95 % 1 1 38570
90 % 3 12 4552
70 % 363 1945 1
50 % 742 4012 1
40 % 742 4014 1
30 % 803 4750 1
Entity #3 | Chains: C
Lysozyme C protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 60520
95 % 469 656 4
90 % 478 673 5
70 % 663 888 6
50 % 667 896 6
40 % 679 930 10
30 % 679 930 17

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.